RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 FAM220AQ7Z4H9 259 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 NAA40Q86UY6 237 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 PPP1R27Q86WC6 154 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 OR13C2Q8NGS9 318 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 TERB2Q8NHR7 220 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 PFN4Q8NHR9 129 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 KCNG3Q8TAE7 436 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 CCL17Q92583 94 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 EMG1Q92979 244 aaKnown RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 LSM10Q969L4 123 aaKnown RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 LGALS12Q96DT0 336 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 RAB3CQ96E17 227 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 RETNLBQ9BQ08 111 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 SEC11CQ9BY50 192 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 C11orf54Q9H0W9 315 aaPredicted RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 C11orf1Q9H5F2 150 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 EXOSC4Q9NPD3 245 aaKnown RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 FKBP11Q9NYL4 201 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 VDAC3Q9Y277 283 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 ORC6Q9Y5N6 252 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 PEX16Q9Y5Y5 336 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 TRAV9-1A0A075B6T8 112 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 NAP1L6A6NFF2 107 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 LINC01546A6NGU7 62 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 E7EUB6 86 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 H3BQ15 152 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 TEX46H3BTG2 121 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 SPINK4O60575 86 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 PDCD6O75340 191 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 KRT33AO76009 404 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 IFNA7P01567 189 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 SLPIP03973 132 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 SLC25A5P05141 298 aaKnown RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 GIPP09681 153 aaPredicted RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 CRYGAP11844 174 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 GTF2F2P13984 249 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 ZBTB25P24278 435 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 C21orf33P30042 268 aaPredicted RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 BLVRBP30043 206 aaPredicted RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 NUDT2P50583 147 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 NKX2-5P52952 324 aaPredicted RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 PTTG1IPP53801 180 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 AQP4P55087 323 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 RAB2AP61019 212 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 RPS7P62081 194 aaKnown RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 CCL8P80075 99 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 ID2Q02363 134 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 GINS1Q14691 196 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 PLCXD3Q63HM9 321 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 SDIM1Q6ZPB5 146 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 ZCCHC23Q6ZST2 131 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 LHFPL1Q86WI0 220 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 MMD2Q8IY49 270 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 SPAG16Q8N0X2 631 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 FAM58AQ8N1B3 248 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 ZNF555Q8NEP9 628 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 BPIFB6Q8NFQ5 453 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 TSPAN14Q8NG11 270 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 OR5T1Q8NG75 326 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 OR56B1Q8NGI3 324 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 OR51A4Q8NGJ6 313 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 OR52I1Q8NGK6 324 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 OR1S2Q8NGQ3 325 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 RORBQ92753 470 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 C14orf144Q96I85 54 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 ZNF479Q96JC4 524 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 C4orf36Q96KX1 117 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 ERMAPQ96PL5 475 aaPredicted RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 IL4I1Q96RQ9 567 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 FEVQ99581 238 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 HSD17B10Q99714 261 aaKnown RBP0.96□□□□□ -2.26
LINC00643-201ENST00000334389 AGMATQ9BSE5 352 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 RPRMQ9NS64 109 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 TAS2R8Q9NYW2 309 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 CCDC167Q9P0B6 97 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 SPATA2Q9UM82 520 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 GOLT1BQ9Y3E0 138 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 IER3IP1Q9Y5U9 82 aa0.96□□□□□ -2.26
LINC00643-201ENST00000334389 IGKV1D-43A0A0B4J1Z2 117 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 LOC100130705A0A1B0GUX0 176 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 C20orf202A1L168 122 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 RBAKDNA6NC62 111 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 CPSF4LA6NMK7 179 aaKnown RBP0.95□□□□□ -2.26
LINC00643-201ENST00000334389 TEX22C9J3V5 150 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 K7EIM0 57 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 GABRPO00591 440 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 SLC16A7O60669 478 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 CST1P01037 141 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 MT-ND4P03905 459 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 HLA-DPB1P04440 258 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 CLEC3BP05452 202 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 CD2P06729 351 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 H2BFMP0C1H6 154 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 HLA-DOBP13765 273 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 BDKRB2P30411 391 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 RCVRNP35243 200 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 CTRLP40313 264 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 MTPNP58546 118 aa0.95□□□□□ -2.26
LINC00643-201ENST00000334389 SUPT4H1P63272 117 aaKnown RBP0.95□□□□□ -2.26
LINC00643-201ENST00000334389 HLA-DRB3P79483 266 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms