RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 NDUFA3O95167 84 aa9.38□□□□□ -0.91
CLIP1-219ENST00000620786 RBMY1DP0C7P1 496 aaKnown RBP9.38□□□□□ -0.91
CLIP1-219ENST00000620786 RBMY1A1P0DJD3 496 aaKnown RBP9.38□□□□□ -0.91
CLIP1-219ENST00000620786 RBMY1CP0DJD4 496 aa9.38□□□□□ -0.91
CLIP1-219ENST00000620786 RPL15P61313 204 aaKnown RBP9.38□□□□□ -0.91
CLIP1-219ENST00000620786 ZNF329Q86UD4 541 aa9.38□□□□□ -0.91
CLIP1-219ENST00000620786 CD55P08174 381 aa9.38□□□□□ -0.91
CLIP1-219ENST00000620786 FXYD7P58549 80 aa9.38□□□□□ -0.91
CLIP1-219ENST00000620786 Q71RC1 249 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-219ENST00000620786 IGKV1-12A0A0C4DH73 117 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 DPRXA6NFQ7 191 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 IGKV1D-12P01611 117 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 IFI27P40305 119 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-219ENST00000620786 B3GALT5-AS1P59052 145 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 C10orf55Q5SWW7 151 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 LYPD2Q6UXB3 125 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 EPDR1Q9UM22 224 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 TRBV7-1A0A0A6YYK4 115 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 RUSC1-AS1Q66K80 236 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 SLC25A48Q6ZT89 311 aaKnown RBP9.37□□□□□ -0.91
CLIP1-219ENST00000620786 MSMBP08118 114 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 ZNF688P0C7X2 276 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 PPIFP30405 207 aaKnown RBP9.37□□□□□ -0.91
CLIP1-219ENST00000620786 ACTL10Q5JWF8 245 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 ORMDL3Q8N138 153 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 PSG8Q9UQ74 426 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 GAGE10A6NGK3 116 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 PSCAO43653 123 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 RCHY1Q96PM5 261 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 PMCHL2Q9BQD1 86 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 SCN8AQ9UQD0 1980 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 IZUMO1RA6ND01 250 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 CD5P06127 495 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 VCX2Q9H322 139 aa9.37□□□□□ -0.91
CLIP1-219ENST00000620786 SVILO95425 2214 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 TRBV7-9A0A0J9YWB2 115 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 ADARB2-AS1A8MUL3 147 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-219ENST00000620786 COL5A1-AS1Q5SY13 56 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 PRSS33Q8NF86 280 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 UQCR10Q9UDW1 63 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 HIGD1CA8MV81 97 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 NDPQ00604 133 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 SPSB3Q6PJ21 355 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 RNF5Q99942 180 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 PGPEP1Q9NXJ5 209 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 SAA4P35542 130 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 FAM89BQ8N5H3 189 aa9.36□□□□□ -0.91
CLIP1-219ENST00000620786 IGKV1-27A0A075B6S5 117 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 FAM223BA6NKX1 122 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 PSPNO60542 156 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 C5orf64Q2M2E5 130 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 FAM223AQ8IWN6 122 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 IMMP2LQ96T52 175 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 FBLN5Q9UBX5 448 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 RIPPLY3P57055 190 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 TMEM155Q4W5P6 130 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 TMEM183AQ8IXX5 376 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 IGKV2-40A0A087WW87 121 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-219ENST00000620786 IGKV2D-40P01614 121 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-219ENST00000620786 LINC00469Q8N7U9 141 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 IGHV3-73A0A0B4J1V6 119 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 H0YJW9 148 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 USMG5Q96IX5 58 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 RNASE7Q9H1E1 156 aaKnown RBP9.35□□□□□ -0.91
CLIP1-219ENST00000620786 DOCK6Q96HP0 2047 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 CD28P10747 220 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 BEND2Q8NDZ0 799 aa9.35□□□□□ -0.91
CLIP1-219ENST00000620786 TRGV1A0A0A0MS02 117 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 SOD3P08294 240 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 GATA3P23771 443 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 COTL1Q14019 142 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 NHLRC3Q5JS37 347 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 GFI1BQ5VTD9 330 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 NUDT10Q8NFP7 164 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 IGKV1D-8A0A087WSZ0 117 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 TRAV5A0A0B4J249 113 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 NBL1P41271 181 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 ZNF362Q5T0B9 420 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-219ENST00000620786 JKAMPQ9P055 326 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 IGHV3-53P01767 116 aa9.34□□□□□ -0.91
CLIP1-219ENST00000620786 TCF23Q7RTU1 214 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 C11orf68Q9H3H3 251 aaKnown RBP9.33□□□□□ -0.92
CLIP1-219ENST00000620786 SEPSECSQ9HD40 501 aaKnown RBP9.33□□□□□ -0.92
CLIP1-219ENST00000620786 A0A087WX48 190 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 PLA2G2CQ5R387 149 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 KLHDC3Q9BQ90 382 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 SRP19P09132 144 aaKnown RBP9.33□□□□□ -0.92
CLIP1-219ENST00000620786 EFNB1P98172 346 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 EFNB3Q15768 340 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 KLF17Q5JT82 389 aaPredicted RBP9.33□□□□□ -0.92
CLIP1-219ENST00000620786 UBE2E2Q96LR5 201 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 SMIM13P0DJ93 91 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 PNRC2Q9NPJ4 139 aaKnown RBP9.33□□□□□ -0.92
CLIP1-219ENST00000620786 MRPL16Q9NX20 251 aaKnown RBP9.33□□□□□ -0.92
CLIP1-219ENST00000620786 IGKV1D-17A0A075B6S4 117 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 J3QRE1 110 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 TCF21O43680 179 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 EVI2AP22794 236 aa9.33□□□□□ -0.92
CLIP1-219ENST00000620786 DNAJC13O75165 2243 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms