RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ATG101Q9BSB4 218 aa7.4□□□□□ -1.22
VPS29-208ENST00000550267 ZNF2Q9BSG1 426 aaPredicted RBP7.4□□□□□ -1.22
VPS29-208ENST00000550267 FXYD6Q9H0Q3 95 aa7.4□□□□□ -1.22
VPS29-208ENST00000550267 RFNGQ9Y644 331 aa7.4□□□□□ -1.22
VPS29-208ENST00000550267 NACAE9PAV3 2078 aa7.4□□□□□ -1.23
VPS29-208ENST00000550267 TEX48A0A1B0GUV7 120 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 SMIM9A6NGZ8 99 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 FAM90A26D6RGX4 464 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 IGKV1-39P01597 117 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 IGKV3-20P01619 116 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 IGKV1D-39P04432 117 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 FAM3BP58499 235 aaPredicted RBP7.39□□□□□ -1.23
VPS29-208ENST00000550267 SFXN4Q6P4A7 337 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 C16orf54Q6UWD8 224 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 DHRS11Q6UWP2 260 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 H2BFWTQ7Z2G1 175 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 CMTM1Q8IZ96 169 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 GLMPQ8WWB7 406 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 SEC22AQ96IW7 307 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 VCXQ9H320 206 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 AUNIPQ9H7T9 357 aa7.39□□□□□ -1.23
VPS29-208ENST00000550267 GPR31O00270 319 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 CLN5O75503 358 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 PMP2P02689 132 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 SLPIP03973 132 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 HLA-DRB4P13762 266 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 SNCAP37840 140 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 CBX5P45973 191 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 RFX2P48378 723 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 EIF2B2P49770 351 aaKnown RBP7.38□□□□□ -1.23
VPS29-208ENST00000550267 DEFB1P60022 68 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 SNRPD3P62318 126 aaKnown RBP7.38□□□□□ -1.23
VPS29-208ENST00000550267 OXA1LQ15070 435 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 IZUMO4Q1ZYL8 232 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 TIGITQ495A1 244 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 PHLDA2Q53GA4 152 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 GDF5OSQ5U4N7 250 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 ZNRF2Q8NHG8 242 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 MRGPRFQ96AM1 343 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 FNDC4Q9H6D8 234 aaPredicted RBP7.38□□□□□ -1.23
VPS29-208ENST00000550267 TXNL4BQ9NX01 149 aaKnown RBP7.38□□□□□ -1.23
VPS29-208ENST00000550267 YTHDF2Q9Y5A9 579 aaKnown RBP7.38□□□□□ -1.23
VPS29-208ENST00000550267 HLA-DRB4X5D2U9 266 aa7.38□□□□□ -1.23
VPS29-208ENST00000550267 EPM2AB3EWF7 344 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 IGKV1-17P01599 117 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 INAFM2P0DMQ5 153 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 RNASE2P10153 161 aaKnown RBP7.37□□□□□ -1.23
VPS29-208ENST00000550267 AP2S1P53680 142 aaPredicted RBP7.37□□□□□ -1.23
VPS29-208ENST00000550267 AQP4P55087 323 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 DAD1P61803 113 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 C15orf53Q8NAA6 179 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 OR4X1Q8NH49 305 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 NRN1Q9NPD7 142 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 IFT46Q9NQC8 304 aa7.37□□□□□ -1.23
VPS29-208ENST00000550267 A0A0A6YYH2 397 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 LOC102723971A0A1B0GUV8 181 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 A6NJ64 397 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 CORTO00230 105 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 HNRNPCP07910 306 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS29-208ENST00000550267 CLEC2LP0C7M8 214 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 OPRK1P41145 380 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 MXD1Q05195 221 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 TBC1D26Q86UD7 250 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 SLC35G3Q8N808 338 aa7.36□□□□□ -1.23
VPS29-208ENST00000550267 SEPSECSQ9HD40 501 aaKnown RBP7.36□□□□□ -1.23
VPS29-208ENST00000550267 FAM212BQ9NTI7 297 aaPredicted RBP7.36□□□□□ -1.23
VPS29-208ENST00000550267 C9orf118A6NHY6 69 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 INS-IGF2F8WCM5 200 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 SCGB2A1O75556 95 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 HBE1P02100 147 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 NKX2-1P43699 371 aaPredicted RBP7.35□□□□□ -1.23
VPS29-208ENST00000550267 SUB1P53999 127 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS29-208ENST00000550267 USF2Q15853 346 aaPredicted RBP7.35□□□□□ -1.23
VPS29-208ENST00000550267 IDNKQ5T6J7 187 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 GSG1LQ6UXU4 331 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 C1orf158Q8N1D5 194 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 ZNF709Q8N972 641 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 OR5H2Q8NGV7 314 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 OR6F1Q8NGZ6 308 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 ANAPC16Q96DE5 110 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 SLC35B3Q9H1N7 401 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 DIABLOQ9NR28 239 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 ANAPC10Q9UM13 185 aa7.35□□□□□ -1.23
VPS29-208ENST00000550267 TRAV30A0A087WSZ9 112 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 RPS10-NUDT3A0A1W2PQS6 291 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 NUDT3O95989 172 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 SDC2P34741 201 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 ETV6P41212 452 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 HOXA1P49639 335 aaPredicted RBP7.34□□□□□ -1.23
VPS29-208ENST00000550267 SCAND1P57086 179 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 DHODHQ02127 395 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 RRN3P1Q2M238 152 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 SIGLEC15Q6ZMC9 328 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 OR4B1Q8NGF8 309 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 Q8WTZ3 238 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 C7orf50Q9BRJ6 194 aaKnown RBP7.34□□□□□ -1.23
VPS29-208ENST00000550267 SAV1Q9H4B6 383 aaPredicted RBP7.34□□□□□ -1.23
VPS29-208ENST00000550267 GOLT1BQ9Y3E0 138 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 LINC00588Q9Y4M8 146 aa7.34□□□□□ -1.23
VPS29-208ENST00000550267 A0A0B4J293 547 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms