RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ZNF502Q8TBZ5 544 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 SIGLEC8Q9NYZ4 499 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 KLF13Q9Y2Y9 288 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 TCRBV4S1A1TA0A5B7 111 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 C2CD4DB7Z1M9 353 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 NPIPB6E9PJ23 425 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 ATP5L2Q7Z4Y8 100 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 ZNF503Q96F45 646 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 C1orf159Q96HA4 380 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 CHAC1Q9BUX1 264 aa9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 FGF23Q9GZV9 251 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-213ENST00000511496 NHLRC4P0CG21 123 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 OR1C1Q15619 314 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 NFE4Q86UQ8 179 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 FNDC10F2Z333 226 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 P0C879 139 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 BRWD1-AS2P59051 145 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 FAM27BQ5VT28 67 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 OR13H1Q8NG92 308 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 PHLDA1Q8WV24 401 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 CDX2Q99626 313 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 TMSB15BA0A087X1C1 80 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 C16orf97H3BN30 126 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 GNG5P63218 68 aa9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 LOXL1Q08397 574 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-213ENST00000511496 AGRNO00468 2067 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 PRRG2O14669 202 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 UBE2L3P68036 154 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 GAB4Q2WGN9 574 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 NCKAP5O14513 1909 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 FABP5P3A8MUU1 101 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 ERVK11-1P61568 191 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 C10orf128Q5T292 105 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 OR5AN1Q8NGI8 311 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 DEFB108AA8MXU0 73 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 CT45A10P0DMU9 189 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 ZNF414Q96IQ9 312 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 PRO0461Q9UI25 63 aa9.81□□□□□ -0.84
LIMCH1-213ENST00000511496 CCL7P80098 99 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 FAM231DQ6ZW35 169 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 DKK2Q9UBU2 259 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 WDFY3Q8IZQ1 3526 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 FAM186AA6NE01 2351 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 NBEAQ8NFP9 2946 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 IGHV3-43A0A0B4J1X8 118 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 LINC00473A8K010 186 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 IGHV3-43DP0DP04 118 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 IFI27P40305 119 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 DIAPH2-AS1Q14236 149 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 C17orf99Q6UX52 265 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 MOB3BQ86TA1 216 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 RAX2Q96IS3 184 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 COL4A2P08572 1712 aa9.8□□□□□ -0.84
LIMCH1-213ENST00000511496 IGKV2D-26A0A0A0MRZ7 120 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 DSCR4P56555 118 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 TTC32Q5I0X7 151 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 SDK1Q7Z5N4 2213 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 IGKV3D-11A0A0A0MRZ8 115 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 PYYP10082 97 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 GFERP55789 205 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 DAZAP1Q96EP5 407 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 RAB1BQ9H0U4 201 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 VPREB3Q9UKI3 123 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 COL4A6Q14031 1691 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 TRAV3A0A0B4J244 114 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 GFRA3O60609 400 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 FCGR3BO75015 233 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 P01737 135 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 C12orf74Q32Q52 190 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 LINC00322Q6ZN03 302 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 TPPP3Q9BW30 176 aa9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 SLC25A10Q9UBX3 287 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-213ENST00000511496 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 TFF2Q03403 129 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 CEND1Q8N111 149 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 TCF19Q9Y242 345 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 VPS13AQ96RL7 3174 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 CFAP54Q96N23 3096 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 IGHV5-51A0A0C4DH38 117 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 PEX7O00628 323 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 IGHV3-9P01782 118 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 SUMO3P55854 103 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 LGALS9BQ3B8N2 356 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 LGALS9CQ6DKI2 356 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 C1orf210Q8IVY1 113 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 PPP1R35Q8TAP8 253 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 RPP25Q9BUL9 199 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 RPP21Q9H633 154 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 FRYQ5TBA9 3013 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 HCFC1P51610 2035 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 LINC01548A6NM66 108 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 SLC25A5P05141 298 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 GAGE2BQ13066 116 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 GAGE2EQ4V326 116 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 ZNF441Q8N8Z8 693 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 RFESDQ8TAC1 157 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 GAGE2DQ9UEU5 116 aa9.78□□□□□ -0.84
LIMCH1-213ENST00000511496 A0A087WX48 190 aa9.77□□□□□ -0.85
LIMCH1-213ENST00000511496 MORN5Q5VZ52 161 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms