RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 CCDC59Q9P031 241 aaKnown RBP3.06□□□□□ -1.92
VPS13D-208ENST00000481484 COMMD3Q9UBI1 195 aa3.06□□□□□ -1.92
VPS13D-208ENST00000481484 MTFP1Q9UDX5 166 aa3.06□□□□□ -1.92
VPS13D-208ENST00000481484 C14orf166Q9Y224 244 aaKnown RBP3.06□□□□□ -1.92
VPS13D-208ENST00000481484 S4R3C0 116 aa3.06□□□□□ -1.92
VPS13D-208ENST00000481484 C3orf85A0A1B0GTC6 90 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 DUXBA0A1W2PPF3 345 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 FAM25AB3EWG3 89 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 FAM25CB3EWG5 89 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 FAM25GB3EWG6 89 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 DISC1C4P0D8 188 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 GABARAPH6UMI1 98 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 DNASE2O00115 360 aaPredicted RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 ST8SIA3O43173 380 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 NOL3O60936 208 aaKnown RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 CLN5O75503 358 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 CA1P00915 261 aaPredicted RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 IFNA4P05014 189 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 ANXA3P12429 323 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 MIFP14174 115 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 ZNF182P17025 639 aaPredicted RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 ELK1P19419 428 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 FAUP35544 74 aaKnown RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 P2RY1P47900 373 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 PPP5CP53041 499 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 AP2S1P53680 142 aaPredicted RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 YPEL3P61236 119 aaPredicted RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 NUTF2P61970 127 aaKnown RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 NCS1P62166 190 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 SNRPD3P62318 126 aaKnown RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 DHODHQ02127 395 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 TMEM187Q14656 261 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 RBMS2Q15434 407 aaKnown RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 BSXQ3C1V8 233 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 GPR107Q5VW38 600 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 FAM90A2PQ658T7 463 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 LGALS9CQ6DKI2 356 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 OR8G2PQ6IF36 304 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 TCF24Q7RTU0 167 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 LYSMD2Q8IV50 215 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 STHQ8IWL8 128 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 TMEM229BQ8NBD8 167 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 SLC24A4Q8NFF2 622 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 TERB2Q8NHR7 220 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 RAB2BQ8WUD1 216 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 RBPMSQ93062 196 aaKnown RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 PINX1Q96BK5 328 aaKnown RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 ZNF503Q96F45 646 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 ZNF414Q96IQ9 312 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 SCGB3A2Q96PL1 93 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 MRPS26Q9BYN8 205 aaKnown RBP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 TMEM222Q9H0R3 208 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 EXTL2Q9UBQ6 330 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 UBQLN2Q9UHD9 624 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 NSG2Q9Y328 171 aa3.05□□□□□ -1.92
VPS13D-208ENST00000481484 PUS1Q9Y606 427 aaKnown RBP eCLIP3.05□□□□□ -1.92
VPS13D-208ENST00000481484 TMEM189A5PLL7 270 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 K7EQG2 157 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 M0QYG6 137 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 CTDSPLO15194 276 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 HPGDSO60760 199 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 CDS2O95674 445 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 RAB3DO95716 219 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 LY6G6CO95867 125 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 CFDP00746 253 aaPredicted RBP3.04□□□□□ -1.92
VPS13D-208ENST00000481484 IGKV1-39P01597 117 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 IGKV1-5P01602 117 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 AMBPP02760 352 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 SLPIP03973 132 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 CD3DP04234 171 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 IGKV1D-39P04432 117 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 HNRNPCP07910 306 aaKnown RBP eCLIP3.04□□□□□ -1.92
VPS13D-208ENST00000481484 AKAIN1P0CW23 69 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 RNASE2P10153 161 aaKnown RBP3.04□□□□□ -1.92
VPS13D-208ENST00000481484 RPL35AP18077 110 aaKnown RBP3.04□□□□□ -1.92
VPS13D-208ENST00000481484 NPPCP23582 126 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 NPY1RP25929 384 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 CRYBB3P26998 211 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 TGFBR1P36897 503 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 AP3S2P59780 193 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 VBP1P61758 197 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 LSM3P62310 102 aaKnown RBP3.04□□□□□ -1.92
VPS13D-208ENST00000481484 CTF1Q16619 201 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 C2orf83Q53S99 150 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 SPATA31B1PQ5VZV4 182 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 STEAP1BQ6NZ63 245 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 TOMM20LQ6UXN7 152 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 GPR141Q7Z602 305 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 STXBP6Q8NFX7 210 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 OR13C8Q8NGS7 320 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 OR11H2Q8NH07 326 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 OR52I2Q8NH67 350 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 C11orf45Q8TAV5 145 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 PHLDA1Q8WV24 401 aaPredicted RBP3.04□□□□□ -1.92
VPS13D-208ENST00000481484 ST8SIA2Q92186 375 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 C16orf92Q96LL3 132 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 TP53RKQ96S44 253 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 RARRES2Q99969 163 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 MS4A6AQ9H2W1 248 aa3.04□□□□□ -1.92
VPS13D-208ENST00000481484 NAA60Q9H7X0 242 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms