RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 INSP01308 110 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 IGKV3-20P01619 116 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 CD37P11049 281 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 LORP23490 312 aaPredicted RBP5.4□□□□□ -1.54
USP54-211ENST00000474929 FXYD7P58549 80 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 WT1-ASQ06250 92 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 NEDD8Q15843 81 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 SFXN4Q6P4A7 337 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 OR1L8Q8NGR8 309 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 GLMPQ8WWB7 406 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 TMEM37Q8WXS4 190 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 FAM3DQ96BQ1 224 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 C16orf74Q96GX8 76 aa5.4□□□□□ -1.54
USP54-211ENST00000474929 HDHD3Q9BSH5 251 aaPredicted RBP5.4□□□□□ -1.54
USP54-211ENST00000474929 MRPS26Q9BYN8 205 aaKnown RBP5.4□□□□□ -1.54
USP54-211ENST00000474929 A0A0A6YYD4 124 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 A0A0J9YY99 117 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 LRCOL1A6NCL2 159 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 TMEM14DPA8MWL7 114 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.39□□□□□ -1.55
USP54-211ENST00000474929 RAB27BO00194 218 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 UPK2O00526 184 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 SLC17A2O00624 439 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 PDCD5O14737 125 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 GSTZ1O43708 216 aaPredicted RBP5.39□□□□□ -1.55
USP54-211ENST00000474929 NQO2P16083 231 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 MYL9P24844 172 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 NUP62P37198 522 aaPredicted RBP5.39□□□□□ -1.55
USP54-211ENST00000474929 ID1P41134 155 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 RANBP1P43487 201 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 QRFPP83859 136 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 POU2AF1Q16633 256 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 IGSF11Q5DX21 431 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 SAMD13Q5VXD3 122 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 EBLN2Q6P2I7 272 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 H1FOOQ8IZA3 346 aaPredicted RBP5.39□□□□□ -1.55
USP54-211ENST00000474929 TMEM256Q8N2U0 113 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 OR10W1Q8NGF6 305 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 PPP1R14BQ96C90 147 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 MISP3Q96FF7 219 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 LPAR5Q9H1C0 372 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 DCSTAMPQ9H295 470 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 NDUFB11Q9NX14 153 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 SSR3Q9UNL2 185 aa5.39□□□□□ -1.55
USP54-211ENST00000474929 TRAV1-2A0A0B4J238 106 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 LOC100506127A0A0U1RQW1 187 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 TMEM272A0A1B0GTI8 110 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 I3L2K1 104 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 CD3GP09693 182 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 CLEC2LP0C7M8 214 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 RAB3BP20337 219 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 CDKN1BP46527 198 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 RORCP51449 518 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 PAX9P55771 341 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 TMEM50BP56557 158 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 MXD1Q05195 221 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 CD300CQ08708 224 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 ZNF79Q15937 498 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 XP32Q5T750 250 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 COQ8AQ8NI60 647 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 ARHGAP5-AS1Q96IT6 56 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 DNAJC4Q9NNZ3 241 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 TXNL4BQ9NX01 149 aaKnown RBP5.38□□□□□ -1.55
USP54-211ENST00000474929 RAB22AQ9UL26 194 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 TNFRSF18Q9Y5U5 241 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 FSIP2Q5CZC0 6907 aa5.38□□□□□ -1.55
USP54-211ENST00000474929 A0A075B6Q4 140 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 IFITM5A6NNB3 132 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 J3QRK9 145 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 MT-CO2P00403 227 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 HPRT1P00492 218 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 FCGR3AP08637 254 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 GADD45AP24522 165 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 SDC2P34741 201 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 ETV6P41212 452 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 PSMB3P49720 205 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 ARPC4P59998 168 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 ERVK-16P61578 105 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 RPL30P62888 115 aaKnown RBP5.37□□□□□ -1.55
USP54-211ENST00000474929 CATR1Q13166 79 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 ZNF493Q6ZR52 646 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 LINC00299Q6ZSB3 139 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 FAM89BQ8N5H3 189 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 DMBX1Q8NFW5 382 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 TSPAN14Q8NG11 270 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 PECRQ9BY49 303 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 SLC35B3Q9H1N7 401 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 ATG5Q9H1Y0 275 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 NDUFA4L2Q9NRX3 87 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 TMEM140Q9NV12 185 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 FKBP11Q9NYL4 201 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 COMMD9Q9P000 198 aa5.37□□□□□ -1.55
USP54-211ENST00000474929 A0A087WXM4 84 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 A0A096LPF7 62 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 ZNF98A6NK75 572 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 ZNF705GA8MUZ8 300 aaPredicted RBP5.36□□□□□ -1.55
USP54-211ENST00000474929 CORTO00230 105 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 HNRNPCP07910 306 aaKnown RBP eCLIP5.36□□□□□ -1.55
USP54-211ENST00000474929 CTXN2P0C2S0 81 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 LSM3P62310 102 aaKnown RBP5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms