RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TNRC6BQ9UPQ9 1833 aaKnown RBP0.78□□□□□ -2.29
CCDC88A-212ENST00000474059 FREM1Q5H8C1 2179 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 PRRC2BQ5JSZ5 2229 aaKnown RBP0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 IGKV1-9A0A0C4DH69 117 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 C1orf196B1AJZ1 125 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 C19orf84I3L1E1 186 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 OR1I1O60431 355 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 IFNA6P05013 189 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 OR4E1P0C645 316 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 MGST1P10620 155 aaKnown RBP0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 PLCXD2Q0VAA5 305 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 PDE6HQ13956 83 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 SPA17Q15506 151 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 RNASE10Q5GAN6 216 aaKnown RBP0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 Q6Q795 121 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 LCA10Q71F78 164 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 OR13D1Q8NGV5 346 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 WFDC5Q8TCV5 224 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 ITFG2Q969R8 447 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 ADAT3Q96EY9 351 aaPredicted RBP0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 SIGMAR1Q99720 223 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 TVP23BQ9NYZ1 205 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 SNURFQ9Y675 71 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 SBF1O95248 1867 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 RTTNQ86VV8 2226 aa0.77□□□□□ -2.29
CCDC88A-212ENST00000474059 SCN10AQ9Y5Y9 1956 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 DLG5Q8TDM6 1919 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 A0A087X0T9 212 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 TRAV3A0A0B4J244 114 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 GEMIN2O14893 280 aaKnown RBP0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 OR7C1O76099 320 aaPredicted RBP0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 UBL3O95164 117 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 BAALC-AS2P0C853 105 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 SRIP30626 198 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 SERPINB9P50453 376 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 RHOGP84095 191 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 REEP5Q00765 189 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 LIN52Q52LA3 116 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 OR8D4Q8NGM9 314 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 BTF3L4Q96K17 158 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 ODF3Q96PU9 254 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 HIST1H2BLQ99880 126 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 KIFC1Q9BW19 673 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 RNF122Q9H9V4 155 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 EPDR1Q9UM22 224 aa0.76□□□□□ -2.29
CCDC88A-212ENST00000474059 IGKV2D-26A0A0A0MRZ7 120 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 FAM159BA6NKW6 160 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 TMEM210A6NLX4 147 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 CLDN25C9JDP6 229 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 CYB5BO43169 146 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 SULT1B1O43704 296 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 LYZL6O75951 148 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 CST2P09228 141 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 RAB4BP61018 213 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 CTAG1AP78358 180 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 TSNQ15631 228 aaKnown RBP0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 OR10J5Q8NHC4 309 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 TMEM133Q9H2Q1 129 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 NHP2Q9NX24 153 aaKnown RBP0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 HS3ST2Q9Y278 367 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 SLC35A3Q9Y2D2 325 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 HELZ2Q9BYK8 2649 aaKnown RBP0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 TAF1LQ8IZX4 1826 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 ARHGEF28Q8N1W1 1705 aaKnown RBP0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 RIMBP3CA6NJZ7 1639 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 RIMBP3BA6NNM3 1639 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 CAMSAP1Q5T5Y3 1602 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 RIMBP3Q9UFD9 1639 aa0.75□□□□□ -2.29
CCDC88A-212ENST00000474059 MED13Q9UHV7 2174 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 DENND4CQ5VZ89 1909 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 A0A087WX48 190 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 TRAV12-1A0A0B4J245 112 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 TRAV4A0A0B4J268 109 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 C7orf71A4D174 169 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 J3QRK9 145 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 HYPMO75409 117 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 CYBAP13498 195 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 ERP29P30040 261 aaKnown RBP0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 ZNF93P35789 620 aaPredicted RBP0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 RHOBP62745 196 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 DEFB113Q30KQ7 82 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 AKIRIN2Q53H80 203 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 BRMS1LQ5PSV4 323 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 S100A7AQ86SG5 101 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 OR11H6Q8NGC7 330 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 GNPDA2Q8TDQ7 276 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 FAM172AQ8WUF8 416 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 SFT2D1Q8WV19 159 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 DGCR14Q96DF8 476 aaKnown RBP0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 NMNAT1Q9HAN9 279 aaPredicted RBP0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 ENY2Q9NPA8 101 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 KLK9Q9UKQ9 250 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 ARL2BPQ9Y2Y0 163 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 UTP11Q9Y3A2 253 aaKnown RBP0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 FAM32AQ9Y421 112 aaKnown RBP0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 C22orf24Q9Y442 160 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 SDK1Q7Z5N4 2213 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 MYH7BA7E2Y1 1941 aa0.74□□□□□ -2.29
CCDC88A-212ENST00000474059 TENM3Q9P273 2699 aa0.73□□□□□ -2.29
CCDC88A-212ENST00000474059 LOC110117498A0A087WWA1 95 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 217.2 ms