RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 A0A0B4J293 547 aa12.88□□□□□ -0.35
SHH-205ENST00000472308 IGLC1P0CG04 106 aa12.88□□□□□ -0.35
SHH-205ENST00000472308 SLC35G3Q8N808 338 aa12.88□□□□□ -0.35
SHH-205ENST00000472308 IGKV1-5P01602 117 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 HBE1P02100 147 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 P0C879 139 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 SDC2P34741 201 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 RPL5P46777 297 aaKnown RBP12.87□□□□□ -0.35
SHH-205ENST00000472308 BSXQ3C1V8 233 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 GSG1LQ6UXU4 331 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 SIGLEC15Q6ZMC9 328 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 OR5H2Q8NGV7 314 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 CLUHP3Q96NS8 147 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 SAV1Q9H4B6 383 aaPredicted RBP12.87□□□□□ -0.35
SHH-205ENST00000472308 LINC00588Q9Y4M8 146 aa12.87□□□□□ -0.35
SHH-205ENST00000472308 BUB3O43684 328 aa12.86□□□□□ -0.35
SHH-205ENST00000472308 NAT1P18440 290 aa12.86□□□□□ -0.35
SHH-205ENST00000472308 ALDH3B2P48448 385 aa12.86□□□□□ -0.35
SHH-205ENST00000472308 DHODHQ02127 395 aa12.86□□□□□ -0.35
SHH-205ENST00000472308 MXD1Q05195 221 aa12.86□□□□□ -0.35
SHH-205ENST00000472308 OR6F1Q8NGZ6 308 aa12.86□□□□□ -0.35
SHH-205ENST00000472308 DIABLOQ9NR28 239 aa12.86□□□□□ -0.35
SHH-205ENST00000472308 TRAV30A0A087WSZ9 112 aa12.85□□□□□ -0.35
SHH-205ENST00000472308 SCGB2A1O75556 95 aa12.85□□□□□ -0.35
SHH-205ENST00000472308 ETV6P41212 452 aa12.85□□□□□ -0.35
SHH-205ENST00000472308 HOXA1P49639 335 aaPredicted RBP12.85□□□□□ -0.35
SHH-205ENST00000472308 SUB1P53999 127 aaKnown RBP eCLIP12.85□□□□□ -0.35
SHH-205ENST00000472308 TAS2R46P59540 309 aa12.85□□□□□ -0.35
SHH-205ENST00000472308 ZNF79Q15937 498 aa12.85□□□□□ -0.35
SHH-205ENST00000472308 IDNKQ5T6J7 187 aa12.85□□□□□ -0.35
SHH-205ENST00000472308 FOXI2Q6ZQN5 318 aa12.85□□□□□ -0.35
SHH-205ENST00000472308 GOLT1BQ9Y3E0 138 aa12.85□□□□□ -0.35
SHH-205ENST00000472308 FLG2Q5D862 2391 aaPredicted RBP12.85□□□□□ -0.35
SHH-205ENST00000472308 SRRM2Q9UQ35 2752 aaKnown RBP12.85□□□□□ -0.35
SHH-205ENST00000472308 RPS10-NUDT3A0A1W2PQS6 291 aa12.84□□□□□ -0.35
SHH-205ENST00000472308 NUDT3O95989 172 aa12.84□□□□□ -0.35
SHH-205ENST00000472308 IL4P05112 153 aa12.84□□□□□ -0.35
SHH-205ENST00000472308 HRH1P35367 487 aa12.84□□□□□ -0.35
SHH-205ENST00000472308 YPEL3P61236 119 aaPredicted RBP12.84□□□□□ -0.35
SHH-205ENST00000472308 RRN3P1Q2M238 152 aa12.84□□□□□ -0.35
SHH-205ENST00000472308 OR1S2Q8NGQ3 325 aa12.84□□□□□ -0.35
SHH-205ENST00000472308 Q8WTZ3 238 aa12.84□□□□□ -0.35
SHH-205ENST00000472308 NRG4Q8WWG1 115 aa12.84□□□□□ -0.35
SHH-205ENST00000472308 WDR12Q9GZL7 423 aaKnown RBP12.84□□□□□ -0.35
SHH-205ENST00000472308 BTF3P20290 206 aaKnown RBP12.83□□□□□ -0.36
SHH-205ENST00000472308 RND2P52198 227 aa12.83□□□□□ -0.36
SHH-205ENST00000472308 PRSS54Q6PEW0 395 aa12.83□□□□□ -0.36
SHH-205ENST00000472308 LYSMD2Q8IV50 215 aa12.83□□□□□ -0.36
SHH-205ENST00000472308 OR4B1Q8NGF8 309 aa12.83□□□□□ -0.36
SHH-205ENST00000472308 PRM2P04554 102 aa12.82□□□□□ -0.36
SHH-205ENST00000472308 OR10J1P30954 320 aa12.82□□□□□ -0.36
SHH-205ENST00000472308 CCL18P55774 89 aa12.82□□□□□ -0.36
SHH-205ENST00000472308 TAS2R20P59543 309 aa12.82□□□□□ -0.36
SHH-205ENST00000472308 LINC00052Q96N35 136 aa12.82□□□□□ -0.36
SHH-205ENST00000472308 C7orf50Q9BRJ6 194 aaKnown RBP12.82□□□□□ -0.36
SHH-205ENST00000472308 F6UB75 175 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 SOCS3O14543 225 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 HLA-DMAP28067 261 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 S100GP29377 79 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 RORCP51449 518 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 XGP55808 180 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 PSG9Q00887 426 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 Q5VSD8 79 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 LPCAT3Q6P1A2 487 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 LYPD1Q8N2G4 141 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 SCPEP1Q9HB40 452 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 SSR3Q9UNL2 185 aa12.81□□□□□ -0.36
SHH-205ENST00000472308 EBAG9O00559 213 aa12.8□□□□□ -0.36
SHH-205ENST00000472308 NXPH3O95157 252 aa12.8□□□□□ -0.36
SHH-205ENST00000472308 PSMB9P28065 219 aa12.8□□□□□ -0.36
SHH-205ENST00000472308 HSPA13P48723 471 aa12.8□□□□□ -0.36
SHH-205ENST00000472308 PAX9P55771 341 aa12.8□□□□□ -0.36
SHH-205ENST00000472308 FAM78BQ5VT40 261 aa12.8□□□□□ -0.36
SHH-205ENST00000472308 SSX7Q7RTT5 188 aa12.8□□□□□ -0.36
SHH-205ENST00000472308 RNF141Q8WVD5 230 aa12.8□□□□□ -0.36
SHH-205ENST00000472308 A0A0G2JRQ6 117 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 LYRM9A8MSI8 78 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 F5H768 121 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 GSTZ1O43708 216 aaPredicted RBP12.79□□□□□ -0.36
SHH-205ENST00000472308 DEFB130BP0DP73 79 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 DEFB130AP0DP74 79 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 PSMB3P49720 205 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 AKR1C2P52895 323 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 UCP3P55916 312 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 TP53RKQ96S44 253 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 PDCD10Q9BUL8 212 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 Q9H3A6 140 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 Q9H8V8 135 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 BLOC1S6Q9UL45 172 aa12.79□□□□□ -0.36
SHH-205ENST00000472308 HMCN2Q8NDA2 5059 aa12.78□□□□□ -0.36
SHH-205ENST00000472308 PLAC8L1A1L4L8 177 aa12.78□□□□□ -0.36
SHH-205ENST00000472308 TOMM40O96008 361 aa12.78□□□□□ -0.36
SHH-205ENST00000472308 TMEM170AQ8WVE7 144 aa12.78□□□□□ -0.36
SHH-205ENST00000472308 GPR146Q96CH1 333 aa12.78□□□□□ -0.36
SHH-205ENST00000472308 MAGT1Q9H0U3 335 aa12.78□□□□□ -0.36
SHH-205ENST00000472308 ENY2Q9NPA8 101 aa12.78□□□□□ -0.36
SHH-205ENST00000472308 KLK11Q9UBX7 282 aa12.78□□□□□ -0.36
SHH-205ENST00000472308 A0A0J9YX75 114 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 A8MTW9 85 aa12.77□□□□□ -0.37
SHH-205ENST00000472308 ZNF705GA8MUZ8 300 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms