RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 A0A0D9SG52 128 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 TMEM210A6NLX4 147 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 C1orf196B1AJZ1 125 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 LYNX1P0DP58 116 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 LINC01554Q52M75 96 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 ZNF826PQ6ZT77 177 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 S100A7AQ86SG5 101 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 OOSP2Q86WS3 158 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 C12orf45Q8N5I9 185 aaPredicted RBP0.66□□□□□ -2.3
VPS13A-206ENST00000376646 OR4D11Q8NGI4 311 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 SLC25A40Q8TBP6 338 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 BTF3L4Q96K17 158 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 SERPINI1Q99574 410 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 SLC50A1Q9BRV3 221 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 KIFC1Q9BW19 673 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 REG4Q9BYZ8 158 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 OSTCQ9NRP0 149 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 PCF11O94913 1555 aaKnown RBP0.66□□□□□ -2.3
VPS13A-206ENST00000376646 RP1P56715 2156 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 MICAL3Q7RTP6 2002 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 TRAV14DV4A0A0A6YYC5 116 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 TRAV1-1A0A0B4J248 108 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 MRPS14O60783 128 aaKnown RBP0.66□□□□□ -2.3
VPS13A-206ENST00000376646 ATP5HO75947 161 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 C8GP07360 202 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 CASP1P29466 404 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 SERPINB9P50453 376 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 MRPS15P82914 257 aaKnown RBP0.66□□□□□ -2.3
VPS13A-206ENST00000376646 RHEBQ15382 184 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 LIN52Q52LA3 116 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 UNQ6190/PRO20217Q6UXQ8 127 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 DEFB128Q7Z7B8 93 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 TRAPPC6BQ86SZ2 158 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 AQP3Q92482 292 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 CHMP6Q96FZ7 201 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 FAM32AQ9Y421 112 aaKnown RBP0.66□□□□□ -2.3
VPS13A-206ENST00000376646 RTL1A6NKG5 1358 aa0.65□□□□□ -2.3
VPS13A-206ENST00000376646 INTS1Q8N201 2190 aaKnown RBP0.65□□□□□ -2.3
VPS13A-206ENST00000376646 TENM4Q6N022 2769 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 FUOMA2VDF0 154 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 CLDN25C9JDP6 229 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 TCL1BO95988 128 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 ASAH2BP0C7U1 165 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 COX6A1P12074 109 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 PPIBP23284 216 aaKnown RBP0.65□□□□□ -2.31
VPS13A-206ENST00000376646 C10orf55Q5SWW7 151 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 C10orf105Q8TEF2 133 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 CYSTM1Q9H1C7 97 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 NMNAT1Q9HAN9 279 aaPredicted RBP0.65□□□□□ -2.31
VPS13A-206ENST00000376646 ENY2Q9NPA8 101 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 ARL2BPQ9Y2Y0 163 aa0.65□□□□□ -2.31
VPS13A-206ENST00000376646 FASNP49327 2511 aaKnown RBP0.65□□□□□ -2.31
VPS13A-206ENST00000376646 IGKV2-40A0A087WW87 121 aaPredicted RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 OR7C1O76099 320 aaPredicted RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 IGKV2D-40P01614 121 aaPredicted RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 MGST1P10620 155 aaKnown RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 RNASE3P12724 160 aaKnown RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 HSD11B1P28845 292 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 AKIRIN2Q53H80 203 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 SPANXN5Q5MJ07 72 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 Q6Q795 121 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 WFDC5Q8TCV5 224 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 GPR146Q96CH1 333 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 TVP23BQ9NYZ1 205 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 OR5AC2Q9NZP5 309 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 SOX21Q9Y651 276 aaPredicted RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 ANKRD11Q6UB99 2663 aaPredicted RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 ASH1LQ9NR48 2969 aaKnown RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 MED12LQ86YW9 2145 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 ANAPC1Q9H1A4 1944 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 COL24A1Q17RW2 1714 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 RYR2Q92736 4967 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 LAMB2P55268 1798 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 SETBP1Q9Y6X0 1596 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 IGKV3-7A0A075B6H7 116 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 A0A087X0T9 212 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 TRAV3A0A0B4J244 114 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 FAM159BA6NKW6 160 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 CYB5BO43169 146 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 SERPINA1P01009 418 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 ERP29P30040 261 aaKnown RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 SRIP30626 198 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 YPEL3P61236 119 aaPredicted RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 RHOBP62745 196 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 RNASE10Q5GAN6 216 aaKnown RBP0.64□□□□□ -2.31
VPS13A-206ENST00000376646 LCA10Q71F78 164 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 OR8D4Q8NGM9 314 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 RETNLBQ9BQ08 111 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 MED9Q9NWA0 146 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 SPTBN4Q9H254 2564 aa0.64□□□□□ -2.31
VPS13A-206ENST00000376646 BDP1A6H8Y1 2624 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 ARFGEF3Q5TH69 2177 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 IGKV1-9A0A0C4DH69 117 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 C2orf70A6NJV1 201 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 HCRTO43612 131 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 OR2T1O43869 369 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 ANGP03950 147 aaKnown RBP0.63□□□□□ -2.31
VPS13A-206ENST00000376646 CST2P09228 141 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 OR4E1P0C645 316 aa0.63□□□□□ -2.31
VPS13A-206ENST00000376646 BRS3P32247 399 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms