RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	FRZB	Q92765	325 aa		11.39	□□□□□ -0.59
CLK3-223	ENST00000568488	C18orf15	Q96N68	181 aa		11.39	□□□□□ -0.59
CLK3-223	ENST00000568488	ACOT13	Q9NPJ3	140 aa		11.39	□□□□□ -0.59
CLK3-223	ENST00000568488	YTHDF2	Q9Y5A9	579 aa	Known RBP	11.39	□□□□□ -0.59
CLK3-223	ENST00000568488	RAB3B	P20337	219 aa		11.38	□□□□□ -0.59
CLK3-223	ENST00000568488	SNRPD3	P62318	126 aa	Known RBP	11.38	□□□□□ -0.59
CLK3-223	ENST00000568488	DLK1	P80370	383 aa		11.38	□□□□□ -0.59
CLK3-223	ENST00000568488	ERH	P84090	104 aa	Known RBP	11.38	□□□□□ -0.59
CLK3-223	ENST00000568488	LYPD1	Q8N2G4	141 aa		11.38	□□□□□ -0.59
CLK3-223	ENST00000568488	TSC22D3	Q99576	134 aa		11.38	□□□□□ -0.59
CLK3-223	ENST00000568488	TRAV1-2	A0A0B4J238	106 aa		11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	MYL9	P24844	172 aa		11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	GNRHR	P30968	328 aa		11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	CCL18	P55774	89 aa		11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	HERV-K104	P61576	105 aa		11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	OGFRL1	Q5TC84	451 aa	Predicted RBP	11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	ZNF114	Q8NC26	417 aa		11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	OR4A16	Q8NH70	328 aa		11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	SCN3B	Q9NY72	215 aa		11.37	□□□□□ -0.59
CLK3-223	ENST00000568488	LOC102723971	A0A1B0GUV8	181 aa		11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	SMIM30	A4D0T7	59 aa		11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	PGLYRP1	O75594	196 aa	Predicted RBP	11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	HBE1	P02100	147 aa		11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	AP2S1	P53680	142 aa	Predicted RBP	11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	MLLT11	Q13015	90 aa	Predicted RBP	11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	CADM3	Q8N126	398 aa		11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	BORCS5	Q969J3	196 aa		11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	C7orf50	Q9BRJ6	194 aa	Known RBP	11.36	□□□□□ -0.59
CLK3-223	ENST00000568488	FAM90A26	D6RGX4	464 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	HLA-DRB4	P13762	266 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	PRCD	Q00LT1	54 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	SPINK9	Q5DT21	86 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	HOGA1	Q86XE5	327 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	PACRGL	Q8N7B6	248 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	LGALS14	Q8TCE9	139 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	GOLT1B	Q9Y3E0	138 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	LINC00588	Q9Y4M8	146 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488	HLA-DRB4	X5D2U9	266 aa		11.35	□□□□□ -0.59
CLK3-223	ENST00000568488		J3QL48	77 aa		11.34	□□□□□ -0.59
CLK3-223	ENST00000568488	SCGN	O76038	276 aa		11.34	□□□□□ -0.59
CLK3-223	ENST00000568488	SNCA	P37840	140 aa		11.34	□□□□□ -0.59
CLK3-223	ENST00000568488	DEFB1	P60022	68 aa		11.34	□□□□□ -0.59
CLK3-223	ENST00000568488	GDF5OS	Q5U4N7	250 aa		11.34	□□□□□ -0.59
CLK3-223	ENST00000568488	C16orf54	Q6UWD8	224 aa		11.34	□□□□□ -0.59
CLK3-223	ENST00000568488	MGLL	Q99685	303 aa		11.34	□□□□□ -0.59
CLK3-223	ENST00000568488	C8orf4	Q9NR00	106 aa		11.34	□□□□□ -0.59
CLK3-223	ENST00000568488	FLG2	Q5D862	2391 aa	Predicted RBP	11.33	□□□□□ -0.6
CLK3-223	ENST00000568488		F5H768	121 aa		11.33	□□□□□ -0.6
CLK3-223	ENST00000568488	XG	P55808	180 aa		11.33	□□□□□ -0.6
CLK3-223	ENST00000568488	HSPE1	P61604	102 aa	Known RBP	11.33	□□□□□ -0.6
CLK3-223	ENST00000568488	RRN3P1	Q2M238	152 aa		11.33	□□□□□ -0.6
CLK3-223	ENST00000568488	GLMP	Q8WWB7	406 aa		11.33	□□□□□ -0.6
CLK3-223	ENST00000568488		Q9H8V8	135 aa		11.33	□□□□□ -0.6
CLK3-223	ENST00000568488	PTTG2	Q9NZH5	202 aa		11.33	□□□□□ -0.6
CLK3-223	ENST00000568488	TRAV18	A0A075B6X5	111 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	CLN5	O75503	358 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	SCGB2A1	O75556	95 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	HNRNPC	P07910	306 aa	Known RBP eCLIP	11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	FUS	P35637	526 aa	Known RBP eCLIP	11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	HOXA1	P49639	335 aa	Predicted RBP	11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	CLINT1	Q14677	625 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	TIGIT	Q495A1	244 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	H2BFWT	Q7Z2G1	175 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	OR4B1	Q8NGF8	309 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	NRN1	Q9NPD7	142 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	MRPL36	Q9P0J6	103 aa	Known RBP	11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	MDFIC	Q9P1T7	246 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488		U3KQE9	123 aa		11.32	□□□□□ -0.6
CLK3-223	ENST00000568488	BTF3	P20290	206 aa	Known RBP	11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	NKX2-1	P43699	371 aa	Predicted RBP	11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	MLANA	Q16655	118 aa		11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	SSX7	Q7RTT5	188 aa		11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	CMTM1	Q8IZ96	169 aa		11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	C1orf158	Q8N1D5	194 aa		11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	OR5AP2	Q8NGF4	316 aa		11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	LINC00052	Q96N35	136 aa		11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	SLC35B3	Q9H1N7	401 aa		11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	SEPSECS	Q9HD40	501 aa	Known RBP	11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	DAPK2	Q9UIK4	370 aa		11.31	□□□□□ -0.6
CLK3-223	ENST00000568488	RGS10	O43665	173 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	SMR3B	P02814	79 aa	Predicted RBP	11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	DEFB130B	P0DP73	79 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	DEFB130A	P0DP74	79 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	OPRK1	P41145	380 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488		Q8WTZ3	238 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	KRTAP1-5	Q9BYS1	174 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	MAGT1	Q9H0U3	335 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	EHF	Q9NZC4	300 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	TPRKB	Q9Y3C4	175 aa		11.3	□□□□□ -0.6
CLK3-223	ENST00000568488	MEIS3P1	A6NDR6	274 aa		11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	ALDH3B2	P48448	385 aa		11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	SUB1	P53999	127 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	TTC32	Q5I0X7	151 aa		11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	C22orf42	Q6IC83	251 aa		11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	SIGLEC15	Q6ZMC9	328 aa		11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	ZNF709	Q8N972	641 aa		11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	OR4X1	Q8NH49	305 aa		11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	ZNF2	Q9BSG1	426 aa	Predicted RBP	11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	TMEM208	Q9BTX3	173 aa		11.29	□□□□□ -0.6
CLK3-223	ENST00000568488	RHBDL2	Q9NX52	303 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms