RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RPS19BP1Q86WX3 136 aaKnown RBP4.01□□□□□ -1.77
VPS35-205ENST00000563984 OR10AC1Q8NH08 325 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 OLIG1Q8TAK6 271 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 TMEM255BQ8WV15 326 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 COPS9Q8WXC6 57 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 TVP23CQ96ET8 276 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 SLC25A44Q96H78 314 aaPredicted RBP4.01□□□□□ -1.77
VPS35-205ENST00000563984 RTL8AQ9BWD3 113 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 C21orf62Q9NYP8 219 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 IL36AQ9UHA7 158 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 RLFQ13129 1914 aa4□□□□□ -1.77
VPS35-205ENST00000563984 DENND4CQ5VZ89 1909 aa4□□□□□ -1.77
VPS35-205ENST00000563984 MYO18AQ92614 2054 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 APOC4-APOC2K7ER74 178 aa4□□□□□ -1.77
VPS35-205ENST00000563984 M0R2P5 195 aa4□□□□□ -1.77
VPS35-205ENST00000563984 CDX4O14627 284 aaPredicted RBP4□□□□□ -1.77
VPS35-205ENST00000563984 GPR137BO60478 399 aa4□□□□□ -1.77
VPS35-205ENST00000563984 PTHP01270 115 aa4□□□□□ -1.77
VPS35-205ENST00000563984 TRACP01848 142 aa4□□□□□ -1.77
VPS35-205ENST00000563984 APOC2P02655 101 aa4□□□□□ -1.77
VPS35-205ENST00000563984 APOHP02749 345 aaPredicted RBP4□□□□□ -1.77
VPS35-205ENST00000563984 SLC25A5P05141 298 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 BRWD1-AS2P59051 145 aa4□□□□□ -1.77
VPS35-205ENST00000563984 SEC61BP60468 96 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 HERV-K104P61576 105 aa4□□□□□ -1.77
VPS35-205ENST00000563984 ZNF85Q03923 595 aa4□□□□□ -1.77
VPS35-205ENST00000563984 DAZ2Q13117 558 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 RTL8BQ17RB0 113 aa4□□□□□ -1.77
VPS35-205ENST00000563984 ECSCRQ19T08 205 aa4□□□□□ -1.77
VPS35-205ENST00000563984 PAPPA-AS1Q5QFB9 102 aa4□□□□□ -1.77
VPS35-205ENST00000563984 SCGB1D4Q6XE38 83 aa4□□□□□ -1.77
VPS35-205ENST00000563984 TMEM179BQ7Z7N9 219 aa4□□□□□ -1.77
VPS35-205ENST00000563984 DAZ4Q86SG3 579 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 SMIM29Q86T20 159 aa4□□□□□ -1.77
VPS35-205ENST00000563984 SLC25A42Q86VD7 318 aa4□□□□□ -1.77
VPS35-205ENST00000563984 ZCCHC24Q8N2G6 241 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 ZIC4Q8N9L1 334 aa4□□□□□ -1.77
VPS35-205ENST00000563984 OR2A1Q8NGT9 310 aa4□□□□□ -1.77
VPS35-205ENST00000563984 OR9G1Q8NH87 305 aa4□□□□□ -1.77
VPS35-205ENST00000563984 FGFBP3Q8TAT2 258 aa4□□□□□ -1.77
VPS35-205ENST00000563984 CMTM2Q8TAZ6 248 aa4□□□□□ -1.77
VPS35-205ENST00000563984 KLK6Q92876 244 aa4□□□□□ -1.77
VPS35-205ENST00000563984 DNAJA3Q96EY1 480 aa4□□□□□ -1.77
VPS35-205ENST00000563984 C2orf48Q96LS8 159 aa4□□□□□ -1.77
VPS35-205ENST00000563984 MCEEQ96PE7 176 aa4□□□□□ -1.77
VPS35-205ENST00000563984 NMNAT3Q96T66 252 aa4□□□□□ -1.77
VPS35-205ENST00000563984 PYGO2Q9BRQ0 406 aa4□□□□□ -1.77
VPS35-205ENST00000563984 DAZ1Q9NQZ3 744 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 DAZ3Q9NR90 486 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 RARRES3Q9UL19 164 aa4□□□□□ -1.77
VPS35-205ENST00000563984 COQ4Q9Y3A0 265 aa4□□□□□ -1.77
VPS35-205ENST00000563984 TET3O43151 1660 aa4□□□□□ -1.77
VPS35-205ENST00000563984 SCN9AQ15858 1988 aa4□□□□□ -1.77
VPS35-205ENST00000563984 TNRC6AQ8NDV7 1962 aaKnown RBP4□□□□□ -1.77
VPS35-205ENST00000563984 C1orf167Q5SNV9 1468 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 PDCD11Q14690 1871 aaKnown RBP3.99□□□□□ -1.77
VPS35-205ENST00000563984 MYO5AQ9Y4I1 1855 aaKnown RBP3.99□□□□□ -1.77
VPS35-205ENST00000563984 UBR1Q8IWV7 1749 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 TRAV27A0A087WT01 109 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 TRAV9-2A0A087WT02 112 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 IZUMO1RA6ND01 250 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 TLCD2A6NGC4 264 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 C17orf112F2Z3M2 114 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 H3BMG7 143 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 SOCS1O15524 211 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 IGKV1D-16P01601 117 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 CRYGAP11844 174 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 KLK7P49862 253 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 TAS2R45P59539 299 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 DAD1P61803 113 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 PNOCQ13519 176 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 MPV17L2Q567V2 206 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 STPG1Q5TH74 334 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 ZNF322Q6U7Q0 402 aaPredicted RBP3.99□□□□□ -1.77
VPS35-205ENST00000563984 TMEM207Q6UWW9 146 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 AAED1Q7RTV5 226 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 PRR15Q8IV56 129 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 DCAF4L2Q8NA75 395 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 OR2T6Q8NHC8 308 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 C18orf32Q8TCD1 76 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 SSC4DQ8WTU2 575 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 APOBEC4Q8WW27 367 aaKnown RBP3.99□□□□□ -1.77
VPS35-205ENST00000563984 ZNF501Q96CX3 271 aaPredicted RBP3.99□□□□□ -1.77
VPS35-205ENST00000563984 IGF2BP2-AS1Q96M15 143 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 VGLL1Q99990 258 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 FGFBP2Q9BYJ0 223 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 KRTAP4-3Q9BYR4 195 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 COMMD5Q9GZQ3 224 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 SDF2L1Q9HCN8 221 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 PCTPQ9UKL6 214 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 ITGB4P16144 1822 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 RGPD4Q7Z3J3 1758 aa3.99□□□□□ -1.77
VPS35-205ENST00000563984 KIF26AQ9ULI4 1882 aaPredicted RBP3.98□□□□□ -1.77
VPS35-205ENST00000563984 FMN2Q9NZ56 1722 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.98□□□□□ -1.77
VPS35-205ENST00000563984 C10orf71Q711Q0 1435 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 ADAMTS13Q76LX8 1427 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 HELZP42694 1942 aaKnown RBP3.98□□□□□ -1.77
VPS35-205ENST00000563984 TRBV20-1A0A075B6N2 111 aa3.98□□□□□ -1.77
VPS35-205ENST00000563984 TRAV13-1A0A0B4J241 112 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms