RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZNF580Q9UK33 172 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 KLK9Q9UKQ9 250 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 TRAV9-1A0A075B6T8 112 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 IGHV1-69DA0A0B4J2H0 117 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 A0A1W2PPR1 153 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 C7orf77A4D0Y5 90 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 FBLL1A6NHQ2 334 aaKnown RBP6.01□□□□□ -1.45
VPS39-204ENST00000561818 C9JCJ5 164 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 CLDN34H7C241 214 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 HYPMO75409 117 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 IGHV1-69P01742 117 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 ARL14EPLP0DKL9 152 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 GCHFRP30047 84 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 OR10J1P30954 320 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 SAA4P35542 130 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 MEOX2P50222 304 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 MFAP4P55083 255 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 YPEL3P61236 119 aaPredicted RBP6.01□□□□□ -1.45
VPS39-204ENST00000561818 GNB1P62873 340 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 SCGB2A2Q13296 93 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 MIC13Q5XKP0 118 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 HCP5Q6MZN7 132 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 KCNIP4Q6PIL6 250 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 ARL6IP6Q8N6S5 226 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 OR51G1Q8NGK1 321 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 TMEM170AQ8WVE7 144 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 C11orf52Q96A22 123 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 ACY3Q96HD9 319 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 OR5B12Q96R08 314 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 CHRDL1Q9BU40 450 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 MEGF9Q9H1U4 602 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 FBXL15Q9H469 300 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 ZNRD1Q9P1U0 126 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 MOB4Q9Y3A3 225 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 HILPDAQ9Y5L2 63 aa6.01□□□□□ -1.45
VPS39-204ENST00000561818 PUS1Q9Y606 427 aaKnown RBP eCLIP6.01□□□□□ -1.45
VPS39-204ENST00000561818 IGHV3-72A0A0B4J1Y9 119 aa6□□□□□ -1.45
VPS39-204ENST00000561818 SERTM2A0A1B0GWG4 89 aa6□□□□□ -1.45
VPS39-204ENST00000561818 NCBP2LA6PVI3 153 aaKnown RBP6□□□□□ -1.45
VPS39-204ENST00000561818 TEX22C9J3V5 150 aa6□□□□□ -1.45
VPS39-204ENST00000561818 DNASE2O00115 360 aaPredicted RBP6□□□□□ -1.45
VPS39-204ENST00000561818 TSPAN4O14817 238 aa6□□□□□ -1.45
VPS39-204ENST00000561818 OR7C2O60412 319 aa6□□□□□ -1.45
VPS39-204ENST00000561818 LY6HO94772 140 aa6□□□□□ -1.45
VPS39-204ENST00000561818 YIF1AO95070 293 aa6□□□□□ -1.45
VPS39-204ENST00000561818 NDUFB8O95169 186 aa6□□□□□ -1.45
VPS39-204ENST00000561818 ZFP36P26651 326 aaKnown RBP6□□□□□ -1.45
VPS39-204ENST00000561818 RND2P52198 227 aa6□□□□□ -1.45
VPS39-204ENST00000561818 CRIP2P52943 208 aaPredicted RBP6□□□□□ -1.45
VPS39-204ENST00000561818 RAB5BP61020 215 aa6□□□□□ -1.45
VPS39-204ENST00000561818 SRSF3P84103 164 aaKnown RBP6□□□□□ -1.45
VPS39-204ENST00000561818 LOXL1Q08397 574 aaPredicted RBP6□□□□□ -1.45
VPS39-204ENST00000561818 DIAPH2-AS1Q14236 149 aa6□□□□□ -1.45
VPS39-204ENST00000561818 TIGITQ495A1 244 aa6□□□□□ -1.45
VPS39-204ENST00000561818 COX19Q49B96 90 aa6□□□□□ -1.45
VPS39-204ENST00000561818 AKIRIN2Q53H80 203 aa6□□□□□ -1.45
VPS39-204ENST00000561818 UTF1Q5T230 341 aa6□□□□□ -1.45
VPS39-204ENST00000561818 CST9LP1Q5W188 147 aa6□□□□□ -1.45
VPS39-204ENST00000561818 LYPD1Q8N2G4 141 aa6□□□□□ -1.45
VPS39-204ENST00000561818 LINC01356Q8N9X3 169 aa6□□□□□ -1.45
VPS39-204ENST00000561818 OR10W1Q8NGF6 305 aa6□□□□□ -1.45
VPS39-204ENST00000561818 OR4F5Q8NH21 305 aa6□□□□□ -1.45
VPS39-204ENST00000561818 OR5R1Q8NH85 324 aa6□□□□□ -1.45
VPS39-204ENST00000561818 SGMS2Q8NHU3 365 aa6□□□□□ -1.45
VPS39-204ENST00000561818 SSMEM1Q8WWF3 244 aa6□□□□□ -1.45
VPS39-204ENST00000561818 NPIPB3Q92617 1050 aa6□□□□□ -1.45
VPS39-204ENST00000561818 HIST1H2BAQ96A08 127 aa6□□□□□ -1.45
VPS39-204ENST00000561818 GPR82Q96P67 336 aa6□□□□□ -1.45
VPS39-204ENST00000561818 OR4F4Q96R69 305 aa6□□□□□ -1.45
VPS39-204ENST00000561818 TBX15Q96SF7 602 aa6□□□□□ -1.45
VPS39-204ENST00000561818 SLC25A33Q9BSK2 321 aa6□□□□□ -1.45
VPS39-204ENST00000561818 TMEM14CQ9P0S9 112 aa6□□□□□ -1.45
VPS39-204ENST00000561818 MLXQ9UH92 298 aa6□□□□□ -1.45
VPS39-204ENST00000561818 CACNA1BQ00975 2339 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 ZZEF1O43149 2961 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 TRBV7-1A0A0A6YYK4 115 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 A0A1B0GV50 99 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 A0A1W2PRD5 423 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 A0A1W2PRF3 423 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 A0A1W2PRM7 423 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 FAM223BA6NKX1 122 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 C1orf196B1AJZ1 125 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 K7EQM0 130 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 GNG7O60262 68 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 PAGE4O60829 102 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 OR2C1O95371 312 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 TOMM40O96008 361 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 SRP14P37108 136 aaKnown RBP5.99□□□□□ -1.45
VPS39-204ENST00000561818 FGF8P55075 233 aaPredicted RBP5.99□□□□□ -1.45
VPS39-204ENST00000561818 TAS2R60P59551 318 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 CD81P60033 236 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 UBE2L3P68036 154 aaKnown RBP5.99□□□□□ -1.45
VPS39-204ENST00000561818 CX3CL1P78423 397 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 CCL20P78556 96 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 PDE6HQ13956 83 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 CLEC12BQ2HXU8 276 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 FAM90A2PQ658T7 463 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 C1QL4Q86Z23 238 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 FAM223AQ8IWN6 122 aa5.99□□□□□ -1.45
VPS39-204ENST00000561818 FAM110DQ8TAY7 271 aaPredicted RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms