RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 LRP1BQ9NZR2 4599 aa13.25□□□□□ -0.29
TPM1-226ENST00000560959 SMIM9A6NGZ8 99 aa13.24□□□□□ -0.29
TPM1-226ENST00000560959 AP2S1P53680 142 aaPredicted RBP13.24□□□□□ -0.29
TPM1-226ENST00000560959 AQP4P55087 323 aa13.24□□□□□ -0.29
TPM1-226ENST00000560959 CORTO00230 105 aa13.23□□□□□ -0.29
TPM1-226ENST00000560959 FCER2P06734 321 aa13.23□□□□□ -0.29
TPM1-226ENST00000560959 RFX2P48378 723 aa13.23□□□□□ -0.29
TPM1-226ENST00000560959 ZNF705AQ6ZN79 300 aaPredicted RBP13.23□□□□□ -0.29
TPM1-226ENST00000560959 H2BFWTQ7Z2G1 175 aa13.23□□□□□ -0.29
TPM1-226ENST00000560959 MAPKAPK5-AS1Q8N8E1 139 aa13.23□□□□□ -0.29
TPM1-226ENST00000560959 OR5H6Q8NGV6 325 aa13.23□□□□□ -0.29
TPM1-226ENST00000560959 TEX48A0A1B0GUV7 120 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 HELTA6NFD8 242 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 C16orf90A8MZG2 172 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 SCGB2A1O75556 95 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 SNCAP37840 140 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 FAM3BP58499 235 aaPredicted RBP13.22□□□□□ -0.29
TPM1-226ENST00000560959 LPCAT3Q6P1A2 487 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 IFT46Q9NQC8 304 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 ANAPC10Q9UM13 185 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 SSR3Q9UNL2 185 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 U3KQE9 123 aa13.22□□□□□ -0.29
TPM1-226ENST00000560959 TMEM127O75204 238 aa13.21□□□□□ -0.29
TPM1-226ENST00000560959 CLN5O75503 358 aa13.21□□□□□ -0.29
TPM1-226ENST00000560959 NAT1P18440 290 aa13.21□□□□□ -0.29
TPM1-226ENST00000560959 S100GP29377 79 aa13.21□□□□□ -0.29
TPM1-226ENST00000560959 DHRS2Q13268 280 aa13.21□□□□□ -0.29
TPM1-226ENST00000560959 OR6F1Q8NGZ6 308 aa13.21□□□□□ -0.29
TPM1-226ENST00000560959 OR4X1Q8NH49 305 aa13.21□□□□□ -0.29
TPM1-226ENST00000560959 XCL2Q9UBD3 114 aa13.21□□□□□ -0.29
TPM1-226ENST00000560959 ZNF705FA8MVS1 300 aaPredicted RBP13.2□□□□□ -0.3
TPM1-226ENST00000560959 H3BMM0 161 aa13.2□□□□□ -0.3
TPM1-226ENST00000560959 ZNF705DP0CH99 300 aaPredicted RBP13.2□□□□□ -0.3
TPM1-226ENST00000560959 ZNF705BP0CI00 300 aaPredicted RBP13.2□□□□□ -0.3
TPM1-226ENST00000560959 SDC2P34741 201 aa13.2□□□□□ -0.3
TPM1-226ENST00000560959 SUB1P53999 127 aaKnown RBP eCLIP13.2□□□□□ -0.3
TPM1-226ENST00000560959 TAS2R46P59540 309 aa13.2□□□□□ -0.3
TPM1-226ENST00000560959 OXA1LQ15070 435 aa13.2□□□□□ -0.3
TPM1-226ENST00000560959 PSMG4Q5JS54 123 aa13.2□□□□□ -0.3
TPM1-226ENST00000560959 Q8N1X5 172 aa13.2□□□□□ -0.3
TPM1-226ENST00000560959 TMEM230Q96A57 120 aa13.2□□□□□ -0.3
TPM1-226ENST00000560959 RNF167Q9H6Y7 350 aa13.2□□□□□ -0.3
TPM1-226ENST00000560959 IGKV1-39P01597 117 aa13.19□□□□□ -0.3
TPM1-226ENST00000560959 IGKV1D-39P04432 117 aa13.19□□□□□ -0.3
TPM1-226ENST00000560959 RPL5P46777 297 aaKnown RBP13.19□□□□□ -0.3
TPM1-226ENST00000560959 PPP5CP53041 499 aa13.19□□□□□ -0.3
TPM1-226ENST00000560959 SNRPD3P62318 126 aaKnown RBP13.19□□□□□ -0.3
TPM1-226ENST00000560959 OR5H2Q8NGV7 314 aa13.19□□□□□ -0.3
TPM1-226ENST00000560959 FXYD6Q9H0Q3 95 aa13.19□□□□□ -0.3
TPM1-226ENST00000560959 TRAV30A0A087WSZ9 112 aa13.18□□□□□ -0.3
TPM1-226ENST00000560959 MEIS3P1A6NDR6 274 aa13.18□□□□□ -0.3
TPM1-226ENST00000560959 PMP2P02689 132 aa13.18□□□□□ -0.3
TPM1-226ENST00000560959 HOXA1P49639 335 aaPredicted RBP13.18□□□□□ -0.3
TPM1-226ENST00000560959 IDNKQ5T6J7 187 aa13.18□□□□□ -0.3
TPM1-226ENST00000560959 C16orf54Q6UWD8 224 aa13.18□□□□□ -0.3
TPM1-226ENST00000560959 GLMPQ8WWB7 406 aa13.18□□□□□ -0.3
TPM1-226ENST00000560959 NIPSNAP3BQ9BS92 247 aa13.18□□□□□ -0.3
TPM1-226ENST00000560959 DKK2Q9UBU2 259 aa13.18□□□□□ -0.3
TPM1-226ENST00000560959 IGKV1-17P01599 117 aa13.17□□□□□ -0.3
TPM1-226ENST00000560959 PHLDA2Q53GA4 152 aa13.17□□□□□ -0.3
TPM1-226ENST00000560959 TBC1D26Q86UD7 250 aa13.17□□□□□ -0.3
TPM1-226ENST00000560959 NRG4Q8WWG1 115 aa13.17□□□□□ -0.3
TPM1-226ENST00000560959 MRGPRFQ96AM1 343 aa13.17□□□□□ -0.3
TPM1-226ENST00000560959 RFNGQ9Y644 331 aa13.17□□□□□ -0.3
TPM1-226ENST00000560959 HERC1Q15751 4861 aa13.16□□□□□ -0.3
TPM1-226ENST00000560959 FAM90A26D6RGX4 464 aa13.16□□□□□ -0.3
TPM1-226ENST00000560959 HNRNPCP07910 306 aaKnown RBP eCLIP13.16□□□□□ -0.3
TPM1-226ENST00000560959 RNASE2P10153 161 aaKnown RBP13.16□□□□□ -0.3
TPM1-226ENST00000560959 HLA-DRB4P13762 266 aa13.16□□□□□ -0.3
TPM1-226ENST00000560959 TNP2Q05952 138 aa13.16□□□□□ -0.3
TPM1-226ENST00000560959 S100A16Q96FQ6 103 aaKnown RBP13.16□□□□□ -0.3
TPM1-226ENST00000560959 FNDC4Q9H6D8 234 aaPredicted RBP13.16□□□□□ -0.3
TPM1-226ENST00000560959 MRPL36Q9P0J6 103 aaKnown RBP13.16□□□□□ -0.3
TPM1-226ENST00000560959 HLA-DRB4X5D2U9 266 aa13.16□□□□□ -0.3
TPM1-226ENST00000560959 CLEC2LP0C7M8 214 aa13.15□□□□□ -0.3
TPM1-226ENST00000560959 UCP3P55916 312 aa13.15□□□□□ -0.3
TPM1-226ENST00000560959 GABARAPL2P60520 117 aa13.15□□□□□ -0.3
TPM1-226ENST00000560959 MXD1Q05195 221 aa13.15□□□□□ -0.3
TPM1-226ENST00000560959 LYSMD2Q8IV50 215 aa13.15□□□□□ -0.3
TPM1-226ENST00000560959 SLC35G3Q8N808 338 aa13.15□□□□□ -0.3
TPM1-226ENST00000560959 FCGR1BQ92637 280 aa13.15□□□□□ -0.3
TPM1-226ENST00000560959 CLUHP3Q96NS8 147 aa13.15□□□□□ -0.3
TPM1-226ENST00000560959 PSMB9P28065 219 aa13.14□□□□□ -0.31
TPM1-226ENST00000560959 OPRK1P41145 380 aa13.14□□□□□ -0.31
TPM1-226ENST00000560959 NKX2-1P43699 371 aaPredicted RBP13.14□□□□□ -0.31
TPM1-226ENST00000560959 EMP1P54849 157 aa13.14□□□□□ -0.31
TPM1-226ENST00000560959 FAM222AQ5U5X8 452 aa13.14□□□□□ -0.31
TPM1-226ENST00000560959 C15orf53Q8NAA6 179 aa13.14□□□□□ -0.31
TPM1-226ENST00000560959 Q8WTZ3 238 aa13.14□□□□□ -0.31
TPM1-226ENST00000560959 NRN1Q9NPD7 142 aa13.14□□□□□ -0.31
TPM1-226ENST00000560959 APOBP04114 4563 aaKnown RBP13.13□□□□□ -0.31
TPM1-226ENST00000560959 A0A0B4J293 547 aa13.13□□□□□ -0.31
TPM1-226ENST00000560959 P0C879 139 aa13.13□□□□□ -0.31
TPM1-226ENST00000560959 HRH1P35367 487 aa13.13□□□□□ -0.31
TPM1-226ENST00000560959 HSPA13P48723 471 aa13.13□□□□□ -0.31
TPM1-226ENST00000560959 YPEL3P61236 119 aaPredicted RBP13.13□□□□□ -0.31
TPM1-226ENST00000560959 MLANAQ16655 118 aa13.13□□□□□ -0.31
TPM1-226ENST00000560959 BSXQ3C1V8 233 aa13.13□□□□□ -0.31
TPM1-226ENST00000560959 TIGITQ495A1 244 aa13.13□□□□□ -0.31
TPM1-226ENST00000560959 SPINK9Q5DT21 86 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms