RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 RPS10-NUDT3A0A1W2PQS6 291 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 PMS2P5A8MQ11 134 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 NUDT19A8MXV4 375 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 SOX15O60248 233 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 IGKV1D-33P01593 117 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 IGKV1-33P01594 117 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 SPP1P10451 314 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 TMEM11P17152 192 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 CLINT1Q14677 625 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 MMDQ15546 238 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 BSXQ3C1V8 233 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 C2orf83Q53S99 150 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 COMMD1Q8N668 190 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 TMEM217Q8N7C4 229 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 BSCL2Q96G97 398 aaPredicted RBP10.91□□□□□ -0.66
LDLR-213ENST00000560502 RAX2Q96IS3 184 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 EAF1Q96JC9 268 aaPredicted RBP10.91□□□□□ -0.66
LDLR-213ENST00000560502 WFDC1Q9HC57 220 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 ZMAT5Q9UDW3 170 aaKnown RBP10.91□□□□□ -0.66
LDLR-213ENST00000560502 LINC00527Q9UJ94 153 aa10.91□□□□□ -0.66
LDLR-213ENST00000560502 LSM4Q9Y4Z0 139 aaKnown RBP10.91□□□□□ -0.66
LDLR-213ENST00000560502 UMAD1C9J7I0 102 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 NHLRC4P0CG21 123 aaPredicted RBP10.9□□□□□ -0.66
LDLR-213ENST00000560502 RPL27AP46776 148 aaKnown RBP10.9□□□□□ -0.66
LDLR-213ENST00000560502 SUB1P53999 127 aaKnown RBP eCLIP10.9□□□□□ -0.66
LDLR-213ENST00000560502 SLC35B1P78383 322 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 DLK1P80370 383 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 SLC25A24Q6NUK1 477 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 SLC35E3Q7Z769 313 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 HAPLN4Q86UW8 402 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 ZNF114Q8NC26 417 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 SCGB1C1Q8TD33 95 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 TMED6Q8WW62 240 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 SAT2Q96F10 170 aaPredicted RBP10.9□□□□□ -0.66
LDLR-213ENST00000560502 DUX3Q96PT4 197 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 PSMG3Q9BT73 122 aaPredicted RBP10.9□□□□□ -0.66
LDLR-213ENST00000560502 UQCC1Q9NVA1 299 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 MED9Q9NWA0 146 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 U3KQK5 164 aa10.9□□□□□ -0.66
LDLR-213ENST00000560502 LINC00862A6NCI5 91 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 LINC01548A6NM66 108 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 MPDU1O75352 247 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 NMBP08949 121 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 SNCAP37840 140 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 SULT1A2P50226 295 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 HES1Q14469 280 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 PLGLAQ15195 96 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 MRGPRG-AS1Q2M3A8 158 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 SPINK9Q5DT21 86 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 HINT2Q9BX68 163 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 TIMM9Q9Y5J7 89 aa10.89□□□□□ -0.67
LDLR-213ENST00000560502 PRSS46E5RG02 174 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 CCL24O00175 119 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 CORTO00230 105 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 ARL16Q0P5N6 197 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 HNF4GQ14541 408 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 TNXAQ16473 311 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 C5orf64Q2M2E5 130 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 OR8G2PQ6IF36 304 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 DPPA3Q6W0C5 159 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 RNF152Q8N8N0 203 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 RNASEH2CQ8TDP1 164 aaKnown RBP10.88□□□□□ -0.67
LDLR-213ENST00000560502 RITA1Q96K30 269 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 WDR61Q9GZS3 305 aaKnown RBP10.88□□□□□ -0.67
LDLR-213ENST00000560502 TPSG1Q9NRR2 321 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 KCNIP2Q9NS61 270 aa10.88□□□□□ -0.67
LDLR-213ENST00000560502 HUWE1Q7Z6Z7 4374 aaKnown RBP10.87□□□□□ -0.67
LDLR-213ENST00000560502 AP4M1O00189 453 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 CA2P00918 260 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 IFNA4P05014 189 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 RPLP1P05386 114 aaKnown RBP10.87□□□□□ -0.67
LDLR-213ENST00000560502 RNASE2P10153 161 aaKnown RBP10.87□□□□□ -0.67
LDLR-213ENST00000560502 CNTFRP26992 372 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 ATP6V0CP27449 155 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 BLOC1S1P78537 153 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 SERF2P84101 59 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 TEX38Q6PEX7 206 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 HSD17B11Q8NBQ5 300 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 OR1L6Q8NGR2 347 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 CACNG8Q8WXS5 425 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 FBXL15Q9H469 300 aa10.87□□□□□ -0.67
LDLR-213ENST00000560502 SORL1Q92673 2214 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 UBE2L5PA0A1B0GUS4 154 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 IGLC7A0M8Q6 106 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 CGB1A6NKQ9 187 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 CFHR3Q02985 330 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 FOXE3Q13461 319 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 DEFB136Q30KP8 78 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 PVRIGQ6DKI7 326 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 ZNF562Q6V9R5 426 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 Q8N9W7 124 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 OR2G3Q8NGZ4 309 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 SRSF12Q8WXF0 261 aaKnown RBP10.86□□□□□ -0.67
LDLR-213ENST00000560502 PRR25Q96S07 402 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 WDR83OSQ9Y284 106 aa10.86□□□□□ -0.67
LDLR-213ENST00000560502 C17orf112F2Z3M2 114 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 HLA-DRB1P01911 266 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 MYOD1P15172 320 aa10.85□□□□□ -0.67
LDLR-213ENST00000560502 GPX4P36969 197 aaPredicted RBP10.85□□□□□ -0.67
LDLR-213ENST00000560502 CDX1P47902 265 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms