RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 WFDC5Q8TCV5 224 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 TMEM106AQ96A25 262 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 CEP19Q96LK0 163 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 PHB2Q99623 299 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 GINS4Q9BRT9 223 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 KIFC1Q9BW19 673 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 CCDC94Q9BW85 323 aaPredicted RBP0.62□□□□□ -2.31
USP3-209ENST00000558925 ENY2Q9NPA8 101 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 C8orf4Q9NR00 106 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 SLC39A9Q9NUM3 307 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 OPTCQ9UBM4 332 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 ERGIC3Q9Y282 383 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 LHFPL6Q9Y693 200 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 BRWD1Q9NSI6 2320 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 ADGRL3Q9HAR2 1447 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 SCN3AQ9NY46 2000 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 ALPK2Q86TB3 2170 aa0.62□□□□□ -2.31
USP3-209ENST00000558925 ECM29Q5VYK3 1845 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 DOCK4Q8N1I0 1966 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 TONSLQ96HA7 1378 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 TRAV3A0A0B4J244 114 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 TMEM212A6NML5 194 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 J3QKU1 62 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 SDCBPO00560 298 aaPredicted RBP0.61□□□□□ -2.31
USP3-209ENST00000558925 CRPP02741 224 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 GPX1P07203 203 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 CTSDP07339 412 aaPredicted RBP0.61□□□□□ -2.31
USP3-209ENST00000558925 RBP1P09455 135 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 ZNF705BP0CI00 300 aaPredicted RBP0.61□□□□□ -2.31
USP3-209ENST00000558925 GPX2P18283 190 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 PPIBP23284 216 aaKnown RBP0.61□□□□□ -2.31
USP3-209ENST00000558925 FXYD2P54710 66 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 ZNF846Q147U1 533 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 LINC01554Q52M75 96 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 AKIRIN2Q53H80 203 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 SPANXN3Q5MJ09 141 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 TEX36Q5VZQ5 186 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 Q6Q795 121 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 LCA10Q71F78 164 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 FP248Q71RG6 208 aaPredicted RBP0.61□□□□□ -2.31
USP3-209ENST00000558925 MIR17HGQ75NE6 70 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 OOSP2Q86WS3 158 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 DHFR2Q86XF0 187 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 TMEM86AQ8N2M4 240 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 SIGLECL1Q8N7X8 197 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 PXT1Q8NFP0 134 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 OR11H6Q8NGC7 330 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 C11orf40Q8WZ69 217 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 ADAT3Q96EY9 351 aaPredicted RBP0.61□□□□□ -2.31
USP3-209ENST00000558925 SCGB3A1Q96QR1 104 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 C20orf27Q9GZN8 174 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 CST9LQ9H4G1 147 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 NMNAT1Q9HAN9 279 aaPredicted RBP0.61□□□□□ -2.31
USP3-209ENST00000558925 OSTCQ9NRP0 149 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 ARMC1Q9NVT9 282 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 MED29Q9NX70 200 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 EML6Q6ZMW3 1958 aa0.61□□□□□ -2.31
USP3-209ENST00000558925 MYH3P11055 1940 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 ANAPC1Q9H1A4 1944 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 MYH10P35580 1976 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 TRGV2A0A075B6R0 118 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 TRAV1-1A0A0B4J248 108 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 IGKV1-9A0A0C4DH69 117 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 TRBV6-5A0A0K0K1A5 114 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 HMGB3O15347 200 aaKnown RBP0.6□□□□□ -2.31
USP3-209ENST00000558925 IFNA10P01566 189 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 HTR1AP08908 422 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 ASAH2BP0C7U1 165 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 NFYAP23511 347 aaPredicted RBP0.6□□□□□ -2.31
USP3-209ENST00000558925 CASP1P29466 404 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 ERP29P30040 261 aaKnown RBP0.6□□□□□ -2.31
USP3-209ENST00000558925 ATP5G3P48201 142 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 GNG10P50151 68 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 TMED2Q15363 201 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 KHDC3LQ587J8 217 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 DHRS4L2Q6PKH6 230 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 DPPA3Q6W0C5 159 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 GOLT1AQ6ZVE7 132 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 AAED1Q7RTV5 226 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 HIST3H2BBQ8N257 126 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 EXOC3-AS1Q8N2X6 119 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 OR8D4Q8NGM9 314 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 AQP3Q92482 292 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 BTF3L4Q96K17 158 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 MRPL32Q9BYC8 188 aaKnown RBP0.6□□□□□ -2.31
USP3-209ENST00000558925 SS18L2Q9UHA2 77 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 UTP11Q9Y3A2 253 aaKnown RBP0.6□□□□□ -2.31
USP3-209ENST00000558925 ARL5AQ9Y689 179 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 SETD5Q9C0A6 1442 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 NEO1Q92859 1461 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 MYH2Q9UKX2 1941 aa0.6□□□□□ -2.31
USP3-209ENST00000558925 NCOA6Q14686 2063 aaPredicted RBP0.6□□□□□ -2.31
USP3-209ENST00000558925 EXPH5Q8NEV8 1989 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 TOPBP1Q92547 1522 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 RP1L1Q8IWN7 2480 aaPredicted RBP0.59□□□□□ -2.31
USP3-209ENST00000558925 OBSL1O75147 1896 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 GLI3P10071 1580 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 TRAV4A0A0B4J268 109 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 TRAPPC13A5PLN9 417 aa0.59□□□□□ -2.31
USP3-209ENST00000558925 TMEM238C9JI98 176 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms