RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CORTO00230 105 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 ZNF672Q499Z4 452 aaPredicted RBP12.35□□□□□ -0.43
CUX1-214ENST00000550008 MUC21Q5SSG8 566 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 GBGT1Q8N5D6 347 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 TRAV5A0A0B4J249 113 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 NBEAP1P0C6P0 100 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 TMEM144Q7Z5S9 345 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 TXNDC17Q9BRA2 123 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 TLN2Q9Y4G6 2542 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 TMEM14EPQ6UXP3 125 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 TCF23Q7RTU1 214 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 GAFA1Q96PS6 74 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 TBX15Q96SF7 602 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 SPOCK3Q9BQ16 436 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 TMEM178BH3BS89 294 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 Q6ZS49 121 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 GGTLC1Q9BX51 225 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 PRO3102Q9H379 93 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 SEPSECSQ9HD40 501 aaKnown RBP12.34□□□□□ -0.43
CUX1-214ENST00000550008 LOC389332A0A1B0GUA5 103 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 LYL1P12980 280 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 EFNB3Q15768 340 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 PIP4P1Q86T03 277 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 TEX50A0A1B0GTY4 177 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 RBFOX2O43251 390 aaKnown RBP eCLIP12.34□□□□□ -0.436e-7■■■□□ 18.3
CUX1-214ENST00000550008 AMY1AP04745 511 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 OR5AL1P0C617 328 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 SRP14P37108 136 aaKnown RBP12.34□□□□□ -0.43
CUX1-214ENST00000550008 CDX1P47902 265 aaPredicted RBP12.34□□□□□ -0.43
CUX1-214ENST00000550008 FOXA3P55318 350 aaPredicted RBP12.34□□□□□ -0.43
CUX1-214ENST00000550008 KLRD1Q13241 179 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 LBHQ53QV2 105 aaPredicted RBP12.34□□□□□ -0.43
CUX1-214ENST00000550008 SRSF12Q8WXF0 261 aaKnown RBP12.34□□□□□ -0.43
CUX1-214ENST00000550008 RNASE7Q9H1E1 156 aaKnown RBP12.34□□□□□ -0.43
CUX1-214ENST00000550008 TMEM131Q92545 1883 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 COLCA2A8K830 154 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 NPIPB11E5RHQ5 1161 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 TIMM23O14925 209 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 SRIP30626 198 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 MFAP4P55083 255 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 GNG5P63218 68 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 TMEM30BQ3MIR4 351 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 HEPN1Q6WQI6 88 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 NEU1Q99519 415 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 WNT10AQ9GZT5 417 aa12.34□□□□□ -0.43
CUX1-214ENST00000550008 GSX1Q9H4S2 264 aaPredicted RBP12.34□□□□□ -0.43
CUX1-214ENST00000550008 CXCL1P09341 107 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 PAX9P55771 341 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 LOXL3P58215 753 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 MUC22E2RYF6 1773 aaPredicted RBP12.33□□□□□ -0.44
CUX1-214ENST00000550008 A8MWL6 223 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 F5H697 171 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 WNK1Q9H4A3 2382 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 ABCA2Q9BZC7 2435 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 FOXI3A8MTJ6 420 aaPredicted RBP12.33□□□□□ -0.44
CUX1-214ENST00000550008 M0QZ24 198 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 NDUFS6O75380 124 aaKnown RBP12.33□□□□□ -0.44
CUX1-214ENST00000550008 ERVK11-1P61568 191 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 KLF17Q5JT82 389 aaPredicted RBP12.33□□□□□ -0.44
CUX1-214ENST00000550008 PPP1R27Q86WC6 154 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 SSC4DQ8WTU2 575 aa12.33□□□□□ -0.44
CUX1-214ENST00000550008 C15orf62A8K5M9 175 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 NHLH1Q02575 133 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 LINC00527Q9UJ94 153 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 MMP23AO75900 390 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 COL8A2P25067 703 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 PRCDQ00LT1 54 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 Q6ZN92 141 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 PLXNB1O43157 2135 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 SIAH2O43255 324 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 RELBQ01201 579 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 E7EQL1 145 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 CA1P00915 261 aaPredicted RBP12.32□□□□□ -0.44
CUX1-214ENST00000550008 CCKARP32238 428 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 CD69Q07108 199 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 MBD3L1Q8WWY6 194 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 BET1LQ9NYM9 111 aa12.32□□□□□ -0.44
CUX1-214ENST00000550008 TAS2R60P59551 318 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 ELOBQ15370 118 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 SPRNQ5BIV9 151 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 OR52E5Q8NH55 327 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 SPRY4Q9C004 299 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 SPSB3Q6PJ21 355 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 OCC1Q8TAD7 63 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 ATG101Q9BSB4 218 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 RNF24Q9Y225 148 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 ISLRO14498 428 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 FOXH1O75593 365 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 PRSS33Q8NF86 280 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 GRAMD2BQ96HH9 432 aa12.31□□□□□ -0.44
CUX1-214ENST00000550008 FAM162BQ5T6X4 162 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 GFI1BQ5VTD9 330 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 MGST2Q99735 147 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 SELENOKQ9Y6D0 94 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 GPR183P32249 361 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 C1QL4Q86Z23 238 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 ATOH7Q8N100 152 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 WNT2P09544 360 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 IGHV1-8P0DP01 117 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 SETD2Q9BYW2 2564 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms