RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 TMEM167AQ8TBQ9 72 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 MALSU1Q96EH3 234 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 SMIM8Q96KF7 97 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 DUX5Q96PT3 197 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.74□□□□□ -1.33
VPS29-203ENST00000546588 CACNG5Q9UF02 275 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 AKAP6Q13023 2319 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 ZNF469Q96JG9 3925 aaPredicted RBP6.74□□□□□ -1.33
VPS29-203ENST00000546588 AKAP9Q99996 3911 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 FXYD6-FXYD2A0A087WZ82 144 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 SRRM4A7MD48 611 aaKnown RBP6.73□□□□□ -1.33
VPS29-203ENST00000546588 TAAR5O14804 337 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 BCL2L11O43521 198 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 SYNGR2O43760 224 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 VENTXO95231 258 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 TMEM50AO95807 157 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 KRASP01116 189 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 RLN2P04090 185 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 OR9G9P0C7N8 305 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 HKR1P10072 659 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 MFAP4P55083 255 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 RAB2AP61019 212 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 UBE2KP61086 200 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 SSBP2P81877 361 aaPredicted RBP6.73□□□□□ -1.33
VPS29-203ENST00000546588 RAB31Q13636 194 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 VAMP3Q15836 100 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 CXorf66Q5JRM2 361 aaPredicted RBP6.73□□□□□ -1.33
VPS29-203ENST00000546588 LEMD1Q68G75 181 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 OR8G2PQ6IF36 304 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 H2BFWTQ7Z2G1 175 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 PNKDQ8N490 385 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 TEX45Q8NA69 505 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 NPBQ8NG41 125 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 OR5B3Q8NH48 314 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 LHX4Q969G2 390 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 RPEQ96AT9 228 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 FLYWCH2Q96CP2 140 aaKnown RBP6.73□□□□□ -1.33
VPS29-203ENST00000546588 ELOVL1Q9BW60 279 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 CTDSP1Q9GZU7 261 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 MAGT1Q9H0U3 335 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 PLSCR3Q9NRY6 295 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 HSPB11Q9Y547 144 aa6.73□□□□□ -1.33
VPS29-203ENST00000546588 TNCP24821 2201 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 CENPVL3A0A0U1RRI6 287 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 KRTAP23-1A1A580 65 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 C5orf52A6NGY3 159 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 MSGN1A6NI15 193 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 UPK2O00526 184 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 GGCTO75223 188 aaKnown RBP6.72□□□□□ -1.33
VPS29-203ENST00000546588 IFNA5P01569 189 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 SAA1P0DJI8 122 aaPredicted RBP6.72□□□□□ -1.33
VPS29-203ENST00000546588 PVALBP20472 110 aaPredicted RBP6.72□□□□□ -1.33
VPS29-203ENST00000546588 DLX1P56177 255 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 ERVK-16P61578 105 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 PKIAP61925 76 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 HERV-K104P63124 156 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 KLRD1Q13241 179 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 ICAM4Q14773 271 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 LRRC37A5PQ49AS3 106 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 PVRIGQ6DKI7 326 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 TMEM14EPQ6UXP3 125 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 C9orf139Q6ZV77 190 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 TMUB2Q71RG4 321 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 SLC16A13Q7RTY0 426 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 COMMD7Q86VX2 200 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 OR10W1Q8NGF6 305 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 PHYHIPLQ96FC7 376 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 HARBI1Q96MB7 349 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 CIB3Q96Q77 187 aaPredicted RBP6.72□□□□□ -1.33
VPS29-203ENST00000546588 VPS25Q9BRG1 176 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 ARV1Q9H2C2 271 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 FKBP11Q9NYL4 201 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 PRNDQ9UKY0 176 aa6.72□□□□□ -1.33
VPS29-203ENST00000546588 WNK2Q9Y3S1 2297 aa6.71□□□□□ -1.33
VPS29-203ENST00000546588 GCN1Q92616 2671 aaKnown RBP6.71□□□□□ -1.34
VPS29-203ENST00000546588 IGHV1-69DA0A0B4J2H0 117 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 TMEM213A2RRL7 107 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 SMCO3A2RU48 225 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 PMS2P5A8MQ11 134 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 NPFFO15130 113 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 GPR137BO60478 399 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 IGHV1-69P01742 117 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 IGHV4-31P0DP07 118 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 COX7A1P24310 79 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 DDTP30046 118 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 RPL12P30050 165 aaKnown RBP6.71□□□□□ -1.34
VPS29-203ENST00000546588 VDAC2P45880 294 aaPredicted RBP6.71□□□□□ -1.34
VPS29-203ENST00000546588 RPL19P84098 196 aaKnown RBP6.71□□□□□ -1.34
VPS29-203ENST00000546588 PRCDQ00LT1 54 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 OPCMLQ14982 345 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 TMEM252Q8N6L7 170 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 UBAC2Q8NBM4 344 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 INO80EQ8NBZ0 244 aaPredicted RBP6.71□□□□□ -1.34
VPS29-203ENST00000546588 ZNF114Q8NC26 417 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 DCUN1D4Q92564 292 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 SRSF8Q9BRL6 282 aaKnown RBP6.71□□□□□ -1.34
VPS29-203ENST00000546588 REG4Q9BYZ8 158 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 CYTL1Q9NRR1 136 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 PTPN13Q12923 2485 aa6.71□□□□□ -1.34
VPS29-203ENST00000546588 ZFHX3Q15911 3703 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms