RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SLC25A33Q9BSK2 321 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 CHD8Q9HCK8 2581 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 SOD3P08294 240 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 CDKN1AP38936 164 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 PLXNB1O43157 2135 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 MBD3L4A6NDZ8 208 aaPredicted RBP12.9□□□□□ -0.34
CUX1-211ENST00000546411 MBD3L3A6NE82 208 aaPredicted RBP12.9□□□□□ -0.34
CUX1-211ENST00000546411 MBD3L5A6NJ08 208 aaPredicted RBP12.9□□□□□ -0.34
CUX1-211ENST00000546411 TNFSF13O75888 250 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 TIMP3P35625 211 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 MBD3L2Q8NHZ7 208 aaPredicted RBP12.9□□□□□ -0.34
CUX1-211ENST00000546411 TEX50A0A1B0GTY4 177 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 DPRXA6NFQ7 191 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 UBE2CO00762 179 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 IGKV1D-33P01593 117 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 IGKV1-33P01594 117 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 ERVK11-1P61568 191 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 LCN2P80188 198 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 FAM19A2Q8N3H0 131 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 SRSF12Q8WXF0 261 aaKnown RBP12.9□□□□□ -0.34
CUX1-211ENST00000546411 SPTBN4Q9H254 2564 aa12.9□□□□□ -0.34
CUX1-211ENST00000546411 RELBQ01201 579 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 CCDC144NLQ6NUI1 221 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 UNQ5815/PRO19632Q6UWF5 114 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 FOXA2Q9Y261 457 aaPredicted RBP12.89□□□□□ -0.35
CUX1-211ENST00000546411 TRAV1-1A0A0B4J248 108 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 CD33P20138 364 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 MEF2CQ06413 473 aaPredicted RBP12.89□□□□□ -0.35
CUX1-211ENST00000546411 TMEM200BQ69YZ2 307 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 LYPD2Q6UXB3 125 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 Q6ZS92 163 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 DMRT1Q9Y5R6 373 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 CCDC168Q8NDH2 2452 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 CORTO00230 105 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 COX19Q49B96 90 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 HAPLN4Q86UW8 402 aa12.89□□□□□ -0.35
CUX1-211ENST00000546411 GSX1Q9H4S2 264 aaPredicted RBP12.89□□□□□ -0.35
CUX1-211ENST00000546411 IGHV3-66A0A0C4DH42 116 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 HLA-DQA1P01909 254 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 PRCDQ00LT1 54 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 CD69Q07108 199 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 ZNF788Q6ZQV5 615 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 OR8A1Q8NGG7 326 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 BMPR1BO00238 502 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 MT-ND6P03923 174 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 ZNF726P1Q15940 193 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 SSX8Q7RTT4 187 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 WFDC3Q8IUB2 231 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 OR52E5Q8NH55 327 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 IL36BQ9NZH7 164 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 NPIPB11E5RHQ5 1161 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 UCNP55089 124 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 RNF151Q2KHN1 245 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 AGMATQ9BSE5 352 aa12.88□□□□□ -0.35
CUX1-211ENST00000546411 AMY1AP04745 511 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 ZNF25P17030 456 aaPredicted RBP12.87□□□□□ -0.35
CUX1-211ENST00000546411 DPM3Q9P2X0 92 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 MYO9AB2RTY4 2548 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 K7EM74 188 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 TCAPO15273 167 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 ZNF207O43670 478 aaKnown RBP12.87□□□□□ -0.35
CUX1-211ENST00000546411 GCGP01275 180 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 ADIPOQQ15848 244 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 LINC01551Q86U37 167 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 STAG3L2P0CL84 134 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 STAG3L3P0CL85 134 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 GAFA1Q96PS6 74 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 HIST1H2BLQ99880 126 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 SSBP4Q9BWG4 385 aaPredicted RBP12.87□□□□□ -0.35
CUX1-211ENST00000546411 WNT10AQ9GZT5 417 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 TMEM133Q9H2Q1 129 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 MYO18BQ8IUG5 2567 aa12.87□□□□□ -0.35
CUX1-211ENST00000546411 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.86□□□□□ -0.35
CUX1-211ENST00000546411 MMP23AO75900 390 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 TDGF1P13385 188 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 ZNF134P52741 427 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 RIGQ13278 110 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 LY6DQ14210 128 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 PEX7O00628 323 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 PAFAH1B2P68402 229 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 LY6EQ16553 131 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 TEX38Q6PEX7 206 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 SPOCK3Q9BQ16 436 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 A0A1B0GV90 55 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 GOSR1O95249 250 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 MAS1LP35410 378 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 PYY3Q5JQD4 70 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 ZCCHC14Q8WYQ9 949 aaKnown RBP12.86□□□□□ -0.35
CUX1-211ENST00000546411 C19orf24Q9BVV8 132 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 HTN1P15515 57 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 LMO1P25800 156 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 GPX4P36969 197 aaPredicted RBP12.86□□□□□ -0.35
CUX1-211ENST00000546411 PPP1R27Q86WC6 154 aa12.86□□□□□ -0.35
CUX1-211ENST00000546411 MRPL32Q9BYC8 188 aaKnown RBP12.86□□□□□ -0.35
CUX1-211ENST00000546411 SERF1AO75920 110 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 PRSS1P07477 247 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 TMEM30BQ3MIR4 351 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 KLF17Q5JT82 389 aaPredicted RBP12.85□□□□□ -0.35
CUX1-211ENST00000546411 CACNG8Q8WXS5 425 aa12.85□□□□□ -0.35
CUX1-211ENST00000546411 RNF24Q9Y225 148 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms