RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 A0A075B6Q4 140 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TRAV2A0A0B4J234 112 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TRBV5-5A0A0J9YX44 114 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TEX50A0A1B0GTY4 177 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 HELTA6NFD8 242 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 ZNF705FA8MVS1 300 aaPredicted RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 K7EIM0 57 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TNFSF12O43508 249 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 ATP8B1O43520 1251 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 HBE1P02100 147 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 P0C879 139 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 UBBP0CG47 229 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 ZNF705DP0CH99 300 aaPredicted RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 ZNF705BP0CI00 300 aaPredicted RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TRAPPC2P0DI81 140 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TRAPPC2BP0DI82 140 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 CD36P16671 472 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 CELP19835 753 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 NPPCP23582 126 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 DCKP27707 260 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 GNRHRP30968 328 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 FGF9P31371 208 aaPredicted RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 ETV1P50549 477 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 WT1-ASQ06250 92 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 UNC119Q13432 240 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 OR5I1Q13606 314 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 FLOT2Q14254 428 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 P2RY14Q15391 338 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 RRN3P1Q2M238 152 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 CCDC58Q4VC31 144 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TMPRSS11AQ6ZMR5 421 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 ZNF705AQ6ZN79 300 aaPredicted RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 CDH26Q8IXH8 852 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 GDPD1Q8N9F7 314 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 OR4B1Q8NGF8 309 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TRUB1Q8WWH5 349 aaKnown RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 PINX1Q96BK5 328 aaKnown RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 GRAMD2BQ96HH9 432 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 UQCC2Q9BRT2 126 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 URM1Q9BTM9 101 aaKnown RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TMEM208Q9BTX3 173 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 QTRT1Q9BXR0 403 aaKnown RBP3.29□□□□□ -1.88
LIMS1-214ENST00000542845 MAGT1Q9H0U3 335 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TMEM231Q9H6L2 316 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 VSIRQ9H7M9 311 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 BABAM2Q9NXR7 383 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 TAS2R8Q9NYW2 309 aa3.29□□□□□ -1.88
LIMS1-214ENST00000542845 IGLV5-52A0A0A0MRZ9 124 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 A0A0J9YY99 117 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 A0A1W2PS18 150 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 H3BMM0 161 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 UPK2O00526 184 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 LALBAP00709 142 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 OXTP01178 125 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 PRM2P04554 102 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 LIMS3P0CW19 117 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 LIMS4P0CW20 117 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 HOXB6P17509 224 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 NFYAP23511 347 aaPredicted RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 CALRP27797 417 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 P2RY1P47900 373 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 TMEM50BP56557 158 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 DEFB1P60022 68 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 RPS11P62280 158 aaKnown RBP eCLIP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 SNRPEP62304 92 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 SMN1Q16637 294 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 ESRGQ1W209 222 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 TIMM50Q3ZCQ8 353 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 YIF1BQ5BJH7 314 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 RBM48Q5RL73 367 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 H1FOOQ8IZA3 346 aaPredicted RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 DMBX1Q8NFW5 382 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 FCGR1BQ92637 280 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 SMIM19Q96E16 107 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 NARS2Q96I59 477 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 DERL3Q96Q80 235 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 SLC29A1Q99808 456 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 TM2D1Q9BX74 207 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 KRTAP3-1Q9BYR8 98 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 NXF2Q9GZY0 626 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 LPAR5Q9H1C0 372 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 RBMX2Q9Y388 322 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 GOLT1BQ9Y3E0 138 aa3.28□□□□□ -1.88
LIMS1-214ENST00000542845 F11RQ9Y624 299 aaKnown RBP3.28□□□□□ -1.88
LIMS1-214ENST00000542845 A0A087WTM6 91 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 A4D1N5 150 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 ZNF705GA8MUZ8 300 aaPredicted RBP3.27□□□□□ -1.89
LIMS1-214ENST00000542845 TMEM14DPA8MWL7 114 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 MT-CO2P00403 227 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 ATP5G1P05496 136 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 FCGR3AP08637 254 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 TALDO1P37837 337 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 ATP5G3P48201 142 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 BRWD1-AS2P59051 145 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 SNRPD3P62318 126 aaKnown RBP3.27□□□□□ -1.89
LIMS1-214ENST00000542845 INSL4Q14641 139 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 GDF5OSQ5U4N7 250 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 ZNF773Q6PK81 442 aa3.27□□□□□ -1.89
LIMS1-214ENST00000542845 Q6ZRN7 208 aaPredicted RBP3.27□□□□□ -1.89
LIMS1-214ENST00000542845 SPAG16Q8N0X2 631 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms