RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 APOHP02749 345 aaPredicted RBP11.22□□□□□ -0.61
RTN3-211ENST00000542238 MIFP14174 115 aa11.22□□□□□ -0.61
RTN3-211ENST00000542238 HLA-DMBP28068 263 aa11.22□□□□□ -0.61
RTN3-211ENST00000542238 RORCP51449 518 aa11.22□□□□□ -0.61
RTN3-211ENST00000542238 LSM3P62310 102 aaKnown RBP11.22□□□□□ -0.61
RTN3-211ENST00000542238 PHLDA2Q53GA4 152 aa11.22□□□□□ -0.61
RTN3-211ENST00000542238 MORN3Q6PF18 240 aaPredicted RBP11.22□□□□□ -0.61
RTN3-211ENST00000542238 LILRB2Q8N423 598 aa11.22□□□□□ -0.61
RTN3-211ENST00000542238 CHAC2Q8WUX2 184 aa11.22□□□□□ -0.61
RTN3-211ENST00000542238 AP3S1Q92572 193 aa11.22□□□□□ -0.61
RTN3-211ENST00000542238 FXYD6Q9H0Q3 95 aa11.22□□□□□ -0.61
RTN3-211ENST00000542238 PUS1Q9Y606 427 aaKnown RBP eCLIP11.22□□□□□ -0.61
RTN3-211ENST00000542238 IGHV4-28A0A0C4DH34 117 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 A0A1W2PS18 150 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 RBMY1A1P0DJD3 496 aaKnown RBP11.21□□□□□ -0.61
RTN3-211ENST00000542238 RBMY1CP0DJD4 496 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 SPP1P10451 314 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 NAT1P18440 290 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 SNCAP37840 140 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 ETV6P41212 452 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 EIF2B2P49770 351 aaKnown RBP11.21□□□□□ -0.61
RTN3-211ENST00000542238 HSPE1P61604 102 aaKnown RBP11.21□□□□□ -0.61
RTN3-211ENST00000542238 TSPAN5P62079 268 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 RBMY1FQ15415 496 aaKnown RBP11.21□□□□□ -0.61
RTN3-211ENST00000542238 UBE2NLQ5JXB2 153 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 TMEM69Q5SWH9 247 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 FAM24BQ8N5W8 94 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 SEC22AQ96IW7 307 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 ANAPC10Q9UM13 185 aa11.21□□□□□ -0.61
RTN3-211ENST00000542238 KIAA1109Q2LD37 5005 aa11.21□□□□□ -0.62
RTN3-211ENST00000542238 IGHV4-4A0A075B6R2 117 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 PTTG1O95997 202 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 NPPCP23582 126 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 PRSS3P35030 304 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 HRH1P35367 487 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 TGFBR1P36897 503 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 TBC1D26Q86UD7 250 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 LYSMD2Q8IV50 215 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 STXBP6Q8NFX7 210 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 ZFAND3Q9H8U3 227 aa11.2□□□□□ -0.62
RTN3-211ENST00000542238 TMEM50AO95807 157 aa11.19□□□□□ -0.62
RTN3-211ENST00000542238 HLA-DMAP28067 261 aa11.19□□□□□ -0.62
RTN3-211ENST00000542238 TAS2R20P59543 309 aa11.19□□□□□ -0.62
RTN3-211ENST00000542238 PVRIGQ6DKI7 326 aa11.19□□□□□ -0.62
RTN3-211ENST00000542238 Q6ZTC4 211 aa11.19□□□□□ -0.62
RTN3-211ENST00000542238 TRPT1Q86TN4 253 aaKnown RBP11.19□□□□□ -0.62
RTN3-211ENST00000542238 MRGPRFQ96AM1 343 aa11.19□□□□□ -0.62
RTN3-211ENST00000542238 GRAMD2BQ96HH9 432 aa11.19□□□□□ -0.62
RTN3-211ENST00000542238 NARS2Q96I59 477 aaKnown RBP11.19□□□□□ -0.62
RTN3-211ENST00000542238 METTL26Q96S19 204 aa11.19□□□□□ -0.62
RTN3-211ENST00000542238 ZNF705EA8MWA4 302 aaPredicted RBP11.18□□□□□ -0.62
RTN3-211ENST00000542238 K7EQG2 157 aa11.18□□□□□ -0.62
RTN3-211ENST00000542238 CORTO00230 105 aa11.18□□□□□ -0.62
RTN3-211ENST00000542238 SCGB2A1O75556 95 aa11.18□□□□□ -0.62
RTN3-211ENST00000542238 GIG44P09565 113 aaPredicted RBP11.18□□□□□ -0.62
RTN3-211ENST00000542238 SUB1P53999 127 aaKnown RBP eCLIP11.18□□□□□ -0.62
RTN3-211ENST00000542238 SLC35G3Q8N808 338 aa11.18□□□□□ -0.62
RTN3-211ENST00000542238 SAMD12Q8N8I0 201 aa11.18□□□□□ -0.62
RTN3-211ENST00000542238 RNF126Q9BV68 326 aa11.18□□□□□ -0.62
RTN3-211ENST00000542238 TBC1D24Q9ULP9 559 aa11.18□□□□□ -0.62
RTN3-211ENST00000542238 A0A1B0GU03 582 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 IGKV1-39P01597 117 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 APOA1P02647 267 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 IGKV1D-39P04432 117 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 ZNF688P0C7X2 276 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 S100A5P33763 92 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 SPINK9Q5DT21 86 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 MZT2AQ6P582 158 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 SNX29P2Q8IUI4 249 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 TMEM230Q96A57 120 aa11.17□□□□□ -0.62
RTN3-211ENST00000542238 VPS13DQ5THJ4 4388 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 ELOA3CA0A087WX78 387 aaPredicted RBP11.16□□□□□ -0.62
RTN3-211ENST00000542238 KNCNA6PVL3 124 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 IFNA17P01571 189 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 P0DMU3 169 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 FAM231AP0DMU4 169 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 FAM231CP0DMU5 169 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 MED14OSP0DP75 135 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 C4BPBP20851 252 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 P2RY1P47900 373 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 ACTL10Q5JWF8 245 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 PDCD10Q9BUL8 212 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 CCDC32Q9BV29 185 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 X6R8D5 127 aa11.16□□□□□ -0.62
RTN3-211ENST00000542238 DEFB131BA0A096LNP1 70 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 INS-IGF2F8WCM5 200 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 ATG12O94817 140 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 CRYBB3P26998 211 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 UCP3P55916 312 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 DEFA1P59665 94 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 DEFA3P59666 94 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 CCDC190Q86UF4 302 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 POM121L12Q8N7R1 296 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 ENY2Q9NPA8 101 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 CLEC5AQ9NY25 188 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 RABL2AQ9UBK7 228 aaPredicted RBP11.15□□□□□ -0.62
RTN3-211ENST00000542238 RABL2BQ9UNT1 228 aa11.15□□□□□ -0.62
RTN3-211ENST00000542238 DNAH6Q9C0G6 4158 aa11.15□□□□□ -0.63
RTN3-211ENST00000542238 MUC4Q99102 2169 aa11.14□□□□□ -0.63
RTN3-211ENST00000542238 A0A1B0GVY2 172 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 140.3 ms