RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 FAM3DQ96BQ1 224 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 AQP10Q96PS8 301 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 TMEM30AQ9NV96 361 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 PARP14Q460N5 1801 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 TRAV13-1A0A0B4J241 112 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 KNCNA6PVL3 124 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 MLNRO43193 412 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 MMP23AO75900 390 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 TSPOP30536 169 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 GLIPR1P48060 266 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 BSPH1Q075Z2 132 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 FAM53BQ14153 422 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 P2RY6Q15077 328 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 TWIST1Q15672 202 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 METRNLQ641Q3 311 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 UMODL1-AS1Q8N2C9 162 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 WIPF2Q8TF74 440 aaPredicted RBP4.28□□□□□ -1.72
USP54-216ENST00000498143 TMEM255BQ8WV15 326 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 PPDPFLQ8WWR9 84 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 WDR13Q9H1Z4 485 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 SLC25A10Q9UBX3 287 aaPredicted RBP4.28□□□□□ -1.72
USP54-216ENST00000498143 KLHDC2Q9Y2U9 406 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 TCRBV4S1A1TA0A5B7 111 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 K7EP34 96 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 PAX9P55771 341 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 MEF2CQ06413 473 aaPredicted RBP4.28□□□□□ -1.72
USP54-216ENST00000498143 HEPN1Q6WQI6 88 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 OR2A5Q96R48 311 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 NMES1Q9C002 83 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 IL36GQ9NZH8 169 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 CXCL13O43927 109 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 RBMY1CP0DJD4 496 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 GATA3P23771 443 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 REG1BP48304 166 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 HSPE1P61604 102 aaKnown RBP4.28□□□□□ -1.72
USP54-216ENST00000498143 UBE2G1P62253 170 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 RFLNAQ6ZTI6 216 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 OR1F12Q8NHA8 337 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 SSMEM1Q8WWF3 244 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 PIGCQ92535 297 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 PLEKHA3Q9HB20 300 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 Q9N2J8 555 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 CFAP47Q6ZTR5 3102 aa4.28□□□□□ -1.72
USP54-216ENST00000498143 TRAV2A0A0B4J234 112 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 CEACAM18A8MTB9 384 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 NPIPB6E9PJ23 425 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 FAM72CH0Y354 149 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 DUS4LO95620 317 aaKnown RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 PPP1R3DO95685 299 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 IGHV3-9P01782 118 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 NPC2P61916 151 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 CEACAM16Q2WEN9 425 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 ACTL10Q5JWF8 245 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 FAM72AQ5TYM5 149 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 WDR25Q64LD2 544 aaPredicted RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 FAM72DQ6L9T8 149 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 FAM72BQ86X60 149 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 RPRMLQ8N4K4 120 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 MESP1Q9BRJ9 268 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 FBLN5Q9UBX5 448 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 LSM2Q9Y333 95 aaKnown RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 UNC80Q8N2C7 3258 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 DENND4AQ7Z401 1863 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 DMBT1Q9UGM3 2413 aaPredicted RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 LOC102723996A0A087X1L8 192 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 PLPP2O43688 288 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 SFT2D2O95562 160 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 PYYP10082 97 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 RPL35AP18077 110 aaKnown RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 SRIP30626 198 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 ASIPP42127 132 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 HMGA2P52926 109 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 H2BFSP57053 126 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 TMEM42Q69YG0 159 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 OR4X1Q8NH49 305 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 ZNF488Q96MN9 340 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 MLST8Q9BVC4 326 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 TDRD15B5MCY1 1934 aaKnown RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 KIF26AQ9ULI4 1882 aaPredicted RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 NOTCH4Q99466 2003 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 TMEM212A6NML5 194 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 GGTLC3B5MD39 225 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 NDUFB2O95178 105 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 RFPL3SP0C7P2 107 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 KLRD1Q13241 179 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 SRSF9Q13242 221 aaKnown RBP eCLIP4.27□□□□□ -1.73
USP54-216ENST00000498143 INSL4Q14641 139 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 NPWQ8N729 165 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 TMEM99Q8N816 258 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 NEIL2Q969S2 332 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 PDCD1LG2Q9BQ51 273 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 FAM60AQ9NP50 221 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 COL5A1P20908 1838 aaPredicted RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 HIVEP1P15822 2718 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.27□□□□□ -1.73
USP54-216ENST00000498143 C3orf85A0A1B0GTC6 90 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 GYPBP06028 91 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 LINC00869P0C866 280 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 CBLN1P23435 193 aa4.27□□□□□ -1.73
USP54-216ENST00000498143 CDKN2AP42771 156 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms