RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 LY6G6FQ5SQ64 297 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 TMEM167AQ8TBQ9 72 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 SLC25A28Q96A46 364 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 RCC1LQ96I51 464 aaKnown RBP10.95□□□□□ -0.66
PTPRF-215ENST00000496447 SOX21Q9Y651 276 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-215ENST00000496447 EP300Q09472 2414 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-215ENST00000496447 TRBV24-1A0A075B6N3 115 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 PEX7O00628 323 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 PAX1P15863 534 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 C17orf82Q86X59 251 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-215ENST00000496447 IGHV2-70P01814 119 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 GGNQ86UU5 652 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 FGFBP3Q8TAT2 258 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 RTTNQ86VV8 2226 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 LTBP1Q14766 1721 aa10.95□□□□□ -0.66
PTPRF-215ENST00000496447 ZNF646O15015 1829 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-215ENST00000496447 TDGF1P3P51864 188 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 MBD3L1Q8WWY6 194 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 RTBDNQ9BSG5 229 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-215ENST00000496447 MRPS16Q9Y3D3 137 aaKnown RBP10.94□□□□□ -0.66
PTPRF-215ENST00000496447 LINC00271P0C7V0 271 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 GATA2P23769 480 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-215ENST00000496447 UBE2V1Q13404 147 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 ST6GALNAC3Q8NDV1 305 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 NRN1Q9NPD7 142 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 Q0VFX4 171 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 GTSCR1Q86UQ5 136 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 FMC1Q96HJ9 113 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 ANAPC13Q9BS18 74 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 F11RQ9Y624 299 aaKnown RBP10.94□□□□□ -0.66
PTPRF-215ENST00000496447 CNOT1A5YKK6 2376 aaKnown RBP10.94□□□□□ -0.66
PTPRF-215ENST00000496447 TRAV9-2A0A087WT02 112 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 SERF1AO75920 110 aa10.94□□□□□ -0.66
PTPRF-215ENST00000496447 ZNF324BQ6AW86 544 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-215ENST00000496447 MDC1Q14676 2089 aaKnown RBP10.93□□□□□ -0.66
PTPRF-215ENST00000496447 SPTBN2O15020 2390 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 CCL1P22362 96 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 FAM166AQ6J272 317 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 OR13C6PQ8NH95 151 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 MSRB2Q9Y3D2 182 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 NEUROG1Q92886 237 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 RNF126Q9BV68 326 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 Q9H3A6 140 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 A0A0G2JNJ9 132 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 C15orf61A6NNL5 157 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 FOXG1P55316 489 aaPredicted RBP10.93□□□□□ -0.66
PTPRF-215ENST00000496447 PVRIGQ6DKI7 326 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 MIR17HGQ75NE6 70 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 MRAP2Q96G30 205 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 Q9UFV3 132 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 GLMPQ8WWB7 406 aa10.93□□□□□ -0.66
PTPRF-215ENST00000496447 MUC21A0A0G2JKD1 596 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 MUC21A0A140T8X8 626 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 LEPP41159 167 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 MUC21Q5SSG8 566 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 GFI1BQ5VTD9 330 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 CEP250Q9BV73 2442 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 H3BUT2 72 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 OR9G9P0C7N8 305 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 SRSF6Q13247 344 aaKnown RBP10.92□□□□□ -0.66
PTPRF-215ENST00000496447 VMO1Q7Z5L0 202 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 TNFRSF14Q92956 283 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 IGKV1-9A0A0C4DH69 117 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 A0A1B0GW64 132 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 B4DSR2 109 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 LYPD3O95274 346 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 FAM131CQ96AQ9 280 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 INTS1Q8N201 2190 aaKnown RBP10.92□□□□□ -0.66
PTPRF-215ENST00000496447 SLC50A1Q9BRV3 221 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 ZNF257Q9Y2Q1 563 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 SCN5AQ14524 2016 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 GCSAMLQ5JQS6 135 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 LINC00527Q9UJ94 153 aa10.92□□□□□ -0.66
PTPRF-215ENST00000496447 IGKV1D-13A0A0B4J2D9 117 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 DUSP14O95147 198 aaKnown RBP10.91□□□□□ -0.66
PTPRF-215ENST00000496447 IGKV1-13P0DP09 117 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 RPL23P62829 140 aaKnown RBP10.91□□□□□ -0.66
PTPRF-215ENST00000496447 TMEM170BQ5T4T1 132 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 RNF125Q96EQ8 232 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 PRELID3AQ96N28 172 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 NEUROG3Q9Y4Z2 214 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 SNRNP200O75643 2136 aaKnown RBP10.91□□□□□ -0.66
PTPRF-215ENST00000496447 OTOFQ9HC10 1997 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 EFNA2O43921 213 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 TMEM144Q7Z5S9 345 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 CIARTQ8N365 385 aaPredicted RBP10.91□□□□□ -0.66
PTPRF-215ENST00000496447 C10orf126Q8N4M7 172 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 MDS2Q8NDY4 140 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 SEC11AP67812 179 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 FAM71F2Q6NXP2 309 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 THADAQ6YHU6 1953 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 C1QTNF9BB2RNN3 333 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 DICER1Q9UPY3 1922 aaKnown RBP10.91□□□□□ -0.66
PTPRF-215ENST00000496447 TRAV41A0A0B4J266 112 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 CXCL1P09341 107 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 CRYGSP22914 178 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 IMMP2LQ96T52 175 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 SLC25A15Q9Y619 301 aa10.91□□□□□ -0.66
PTPRF-215ENST00000496447 SCO2A0A1W2PP80 73 aa10.9□□□□□ -0.66
PTPRF-215ENST00000496447 ITGB1BP1O14713 200 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms