RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ZDHHC16Q969W1 377 aa10.04□□□□□ -0.8
CIITA-202ENST00000381835 MRPL20Q9BYC9 149 aaKnown RBP10.04□□□□□ -0.8
CIITA-202ENST00000381835 SIRPDQ9H106 197 aa10.04□□□□□ -0.8
CIITA-202ENST00000381835 PMS2P5A8MQ11 134 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 C11orf94C9JXX5 98 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 C17orf112F2Z3M2 114 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 BUB1B-PAK6H3BSN5 160 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 RBMXL2O75526 392 aaKnown RBP10.03□□□□□ -0.8
CIITA-202ENST00000381835 IL3RAP26951 378 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 CHRNA7P36544 502 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 MAPK1IP1LQ8NDC0 245 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 BEND2Q8NDZ0 799 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 OR4P4Q8NGL7 312 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 DDB2Q92466 427 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 ST6GALNAC6Q969X2 333 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 ADTRPQ96IZ2 230 aa10.03□□□□□ -0.8
CIITA-202ENST00000381835 POLR3KQ9Y2Y1 108 aaPredicted RBP10.03□□□□□ -0.8
CIITA-202ENST00000381835 TYMSP04818 313 aa10.02□□□□□ -0.8
CIITA-202ENST00000381835 HCP5Q6MZN7 132 aa10.02□□□□□ -0.8
CIITA-202ENST00000381835 TGIF2LXQ8IUE1 241 aa10.02□□□□□ -0.8
CIITA-202ENST00000381835 MBD6Q96DN6 1003 aa10.02□□□□□ -0.8
CIITA-202ENST00000381835 CIB3Q96Q77 187 aaPredicted RBP10.02□□□□□ -0.8
CIITA-202ENST00000381835 ZANQ9Y493 2812 aa10.02□□□□□ -0.8
CIITA-202ENST00000381835 CREBBPQ92793 2442 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 RNF223E7ERA6 249 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 P0C879 139 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 DEFA4P12838 97 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 CDC34P49427 236 aaPredicted RBP10.02□□□□□ -0.81
CIITA-202ENST00000381835 CNN1P51911 297 aaKnown RBP10.02□□□□□ -0.81
CIITA-202ENST00000381835 ZNF137PP52743 207 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 PRSS8Q16651 343 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 SPINK9Q5DT21 86 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 FAM78BQ5VT40 261 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 H2BFWTQ7Z2G1 175 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 INSIG2Q9Y5U4 225 aa10.02□□□□□ -0.81
CIITA-202ENST00000381835 PDZD2O15018 2839 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 HPRT1P00492 218 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 MSMBP08118 114 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 HOXB4P17483 251 aaPredicted RBP10.01□□□□□ -0.81
CIITA-202ENST00000381835 NPPCP23582 126 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 KIR2DS2P43631 304 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 IQCJQ1A5X6 159 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 OR11H6Q8NGC7 330 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 OR4S2Q8NH73 311 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 TBX15Q96SF7 602 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 SLC35D1Q9NTN3 355 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 AMMECR1Q9Y4X0 333 aaPredicted RBP10.01□□□□□ -0.81
CIITA-202ENST00000381835 ZNF469Q96JG9 3925 aaPredicted RBP10.01□□□□□ -0.81
CIITA-202ENST00000381835 CR1P17927 2039 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 A0A096LNT2 108 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 A0A0U1RQK1 487 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 ZNF320A2RRD8 509 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 MARCH11A6NNE9 402 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 TCAPO15273 167 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 IGKV1-16P04430 117 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 HTR1DP28221 377 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 LDLRAD2Q5SZI1 272 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 CST9LP1Q5W188 147 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 FAM71F2Q6NXP2 309 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 VKORC1L1Q8N0U8 176 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 RPEQ96AT9 228 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 R3HDM4Q96D70 268 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 Q96MF0 132 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 NABP2Q9BQ15 211 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 AURKAIP1Q9NWT8 199 aaPredicted RBP10.01□□□□□ -0.81
CIITA-202ENST00000381835 TRAPPC1Q9Y5R8 145 aa10.01□□□□□ -0.81
CIITA-202ENST00000381835 B4DSR2 109 aa10□□□□□ -0.81
CIITA-202ENST00000381835 RBFOX2O43251 390 aaKnown RBP eCLIP10□□□□□ -0.81
CIITA-202ENST00000381835 PDE6DO43924 150 aa10□□□□□ -0.81
CIITA-202ENST00000381835 APOA2P02652 100 aa10□□□□□ -0.81
CIITA-202ENST00000381835 UBE2G2P60604 165 aa10□□□□□ -0.81
CIITA-202ENST00000381835 RTL8BQ17RB0 113 aa10□□□□□ -0.81
CIITA-202ENST00000381835 VWC2Q2TAL6 325 aa10□□□□□ -0.81
CIITA-202ENST00000381835 LHFPL4Q7Z7J7 247 aa10□□□□□ -0.81
CIITA-202ENST00000381835 LINC01551Q86U37 167 aa10□□□□□ -0.81
CIITA-202ENST00000381835 GBGT1Q8N5D6 347 aa10□□□□□ -0.81
CIITA-202ENST00000381835 ABCA1O95477 2261 aa10□□□□□ -0.81
CIITA-202ENST00000381835 IGHV3-72A0A0B4J1Y9 119 aa10□□□□□ -0.81
CIITA-202ENST00000381835 H0YJW9 148 aa10□□□□□ -0.81
CIITA-202ENST00000381835 SCGB1D1O95968 90 aa10□□□□□ -0.81
CIITA-202ENST00000381835 GNB1P62873 340 aa10□□□□□ -0.81
CIITA-202ENST00000381835 PAX8Q06710 450 aa10□□□□□ -0.81
CIITA-202ENST00000381835 OR5AN1Q8NGI8 311 aa10□□□□□ -0.81
CIITA-202ENST00000381835 DPM3Q9P2X0 92 aa10□□□□□ -0.81
CIITA-202ENST00000381835 HILPDAQ9Y5L2 63 aa10□□□□□ -0.81
CIITA-202ENST00000381835 CSPG4Q6UVK1 2322 aa10□□□□□ -0.81
CIITA-202ENST00000381835 TNCP24821 2201 aa10□□□□□ -0.81
CIITA-202ENST00000381835 ZFHX3Q15911 3703 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 ITPR3Q14573 2671 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 ODF3BA8MYP8 253 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 NDUFB4O95168 129 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 CD99P14209 185 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 ATP5G3P48201 142 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 LGALS4P56470 323 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 MOB3BQ86TA1 216 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 KRTAP1-3Q8IUG1 177 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 BTF3L4Q96K17 158 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 HIF1ANQ9NWT6 349 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 FKBP11Q9NYL4 201 aa9.99□□□□□ -0.81
CIITA-202ENST00000381835 A0A1W2PPV4 95 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms