RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.54□□□□□ -0.72
SDC3-201ENST00000336798 SRSF3P84103 164 aaKnown RBP10.54□□□□□ -0.72
SDC3-201ENST00000336798 NHP2Q9NX24 153 aaKnown RBP10.54□□□□□ -0.72
SDC3-201ENST00000336798 LINC00312Q9Y6C7 94 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 POLR2AP24928 1970 aaKnown RBP10.54□□□□□ -0.72
SDC3-201ENST00000336798 EIF4EBP2Q13542 120 aaPredicted RBP10.54□□□□□ -0.72
SDC3-201ENST00000336798 COQ2Q96H96 371 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 TRAV8-4A0A0B4J246 113 aa10.53□□□□□ -0.72
SDC3-201ENST00000336798 PGPEP1LA6NFU8 196 aa10.53□□□□□ -0.72
SDC3-201ENST00000336798 RNASE6Q93091 150 aaKnown RBP10.53□□□□□ -0.72
SDC3-201ENST00000336798 RTBDNQ9BSG5 229 aaPredicted RBP10.53□□□□□ -0.72
SDC3-201ENST00000336798 TIMM23O14925 209 aa10.53□□□□□ -0.72
SDC3-201ENST00000336798 MYOD1P15172 320 aa10.53□□□□□ -0.72
SDC3-201ENST00000336798 PSMG3Q9BT73 122 aaPredicted RBP10.53□□□□□ -0.72
SDC3-201ENST00000336798 EREGO14944 169 aa10.53□□□□□ -0.72
SDC3-201ENST00000336798 PSG1P11464 419 aa10.53□□□□□ -0.72
SDC3-201ENST00000336798 SRSF4Q08170 494 aaKnown RBP10.53□□□□□ -0.72
SDC3-201ENST00000336798 GZMBP10144 247 aa10.53□□□□□ -0.72
SDC3-201ENST00000336798 ADMP35318 185 aa10.52□□□□□ -0.72
SDC3-201ENST00000336798 OR2K2Q8NGT1 345 aa10.52□□□□□ -0.72
SDC3-201ENST00000336798 IZUMO1RA6ND01 250 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 FABP5P3A8MUU1 101 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 GATD1Q8NB37 220 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 RNF125Q96EQ8 232 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 RPL15P61313 204 aaKnown RBP10.52□□□□□ -0.73
SDC3-201ENST00000336798 CIARTQ8N365 385 aaPredicted RBP10.52□□□□□ -0.73
SDC3-201ENST00000336798 DICER1Q9UPY3 1922 aaKnown RBP10.52□□□□□ -0.73
SDC3-201ENST00000336798 IGKV2-40A0A087WW87 121 aaPredicted RBP10.52□□□□□ -0.73
SDC3-201ENST00000336798 IGKV2D-40P01614 121 aaPredicted RBP10.52□□□□□ -0.73
SDC3-201ENST00000336798 RNF182Q8N6D2 247 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 CYSLTR1Q9Y271 337 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 C1QTNF9P0C862 333 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 BRD3OSQ6XYD6 125 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 IMMP1LQ96LU5 166 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 OTORQ9NRC9 128 aa10.52□□□□□ -0.73
SDC3-201ENST00000336798 TRAV5A0A0B4J249 113 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 C1QTNF5Q9BXJ0 243 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 IQCF6A8MYZ5 107 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 CDK2AP2O75956 126 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 NDPQ00604 133 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.51□□□□□ -0.73
SDC3-201ENST00000336798 TMEM133Q9H2Q1 129 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 SPRR3Q9UBC9 169 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 CHTOPQ9Y3Y2 248 aaKnown RBP10.51□□□□□ -0.73
SDC3-201ENST00000336798 CD300EQ496F6 205 aaPredicted RBP10.51□□□□□ -0.73
SDC3-201ENST00000336798 IGKV1D-13A0A0B4J2D9 117 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 UPK2O00526 184 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 IGKV1-13P0DP09 117 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 IGLV3-21P80748 117 aaPredicted RBP10.51□□□□□ -0.73
SDC3-201ENST00000336798 SLX1AQ9BQ83 275 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 MLNRO43193 412 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 LY75O60449 1722 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 UBE2V1Q13404 147 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 ZXDCQ2QGD7 858 aaPredicted RBP10.51□□□□□ -0.73
SDC3-201ENST00000336798 MESP1Q9BRJ9 268 aa10.51□□□□□ -0.73
SDC3-201ENST00000336798 PINLYPA6NC86 204 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 CD200R1LQ6Q8B3 271 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 SIGLEC15Q6ZMC9 328 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 VMO1Q7Z5L0 202 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 SPTBP11277 2137 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 A0A087WV48 116 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 PAX8Q06710 450 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 UBE2E2Q96LR5 201 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 LSM4Q9Y4Z0 139 aaKnown RBP10.5□□□□□ -0.73
SDC3-201ENST00000336798 LAMB2P55268 1798 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 NPIPB13A6NJU9 1138 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 NPIPB5A8MRT5 1133 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 SPACA3Q8IXA5 215 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 C5orf30Q96GV9 206 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 IGHV1-18A0A0C4DH31 117 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 SHISA3A0PJX4 238 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 SERF1AO75920 110 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 VENTXO95231 258 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 NPSP0C0P6 89 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 HOXA3O43365 443 aaPredicted RBP10.5□□□□□ -0.73
SDC3-201ENST00000336798 SRP19P09132 144 aaKnown RBP10.5□□□□□ -0.73
SDC3-201ENST00000336798 FOXF2Q12947 444 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 C1QL4Q86Z23 238 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 COL18A1P39060 1754 aa10.5□□□□□ -0.73
SDC3-201ENST00000336798 WNT2P09544 360 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 FOXL1Q12952 345 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 MORN2Q502X0 79 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 ZNF474Q6S9Z5 364 aaPredicted RBP10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST3H2BBQ8N257 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BLQ99880 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 TM2D1Q9BX74 207 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 A0A087WX48 190 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BKO60814 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BJP06899 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 OR9G9P0C7N8 305 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 GNLYP22749 145 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BOP23527 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BBP33778 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BDP58876 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BCP62807 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 SRSF1Q07955 248 aaKnown RBP eCLIP10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST2H2BEQ16778 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BHQ93079 126 aa10.49□□□□□ -0.73
SDC3-201ENST00000336798 HIST1H2BNQ99877 126 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms