RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 KNL1Q8NG31 2342 aa10.65□□□□□ -0.7
MSH2-201ENST00000233146 IGLL5B9A064 214 aa10.65□□□□□ -0.7
MSH2-201ENST00000233146 GCSHP23434 173 aa10.65□□□□□ -0.7
MSH2-201ENST00000233146 BRWD1-AS2P59051 145 aa10.65□□□□□ -0.7
MSH2-201ENST00000233146 RPL30P62888 115 aaKnown RBP10.65□□□□□ -0.7
MSH2-201ENST00000233146 PCP2Q8IVA1 136 aa10.65□□□□□ -0.7
MSH2-201ENST00000233146 ZNF503Q96F45 646 aa10.65□□□□□ -0.7
MSH2-201ENST00000233146 APOMO95445 188 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 LINC00271P0C7V0 271 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 CATR1Q13166 79 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 DEFB118Q96PH6 123 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 GCM1Q9NP62 436 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 PTPRSQ13332 1948 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 TRAV24A0A0B4J272 114 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 FAM27BQ5VT28 67 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 Q6AWC8 147 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 H2BFWTQ7Z2G1 175 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 ATP6V0E2Q8NHE4 81 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 USF3Q68DE3 2245 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 FNDC10F2Z333 226 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 KRTAP27-1Q3LI81 207 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 ABHD17BQ5VST6 288 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 C17orf99Q6UX52 265 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 ZNF562Q6V9R5 426 aa10.64□□□□□ -0.71
MSH2-201ENST00000233146 FGF23Q9GZV9 251 aaPredicted RBP10.64□□□□□ -0.71
MSH2-201ENST00000233146 TIMM8BQ9Y5J9 83 aaPredicted RBP10.64□□□□□ -0.71
MSH2-201ENST00000233146 COL6A3P12111 3177 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 EIF4EBP1Q13541 118 aaPredicted RBP10.63□□□□□ -0.71
MSH2-201ENST00000233146 LGALS9BQ3B8N2 356 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 LGALS9CQ6DKI2 356 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 CDX2Q99626 313 aaPredicted RBP10.63□□□□□ -0.71
MSH2-201ENST00000233146 TMEM140Q9NV12 185 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 HIGD1BQ9P298 99 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 UNC13CQ8NB66 2214 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 F11RQ9Y624 299 aaKnown RBP10.63□□□□□ -0.71
MSH2-201ENST00000233146 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.63□□□□□ -0.71
MSH2-201ENST00000233146 A0A1B0GWB2 263 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 C5orf49A4QMS7 147 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 LINC00479Q96M42 142 aa10.63□□□□□ -0.71
MSH2-201ENST00000233146 A0A087WX48 190 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 FAM90A9PA6NNJ1 464 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 C17orf98A8MV24 154 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 CELA2BP08218 269 aaPredicted RBP10.62□□□□□ -0.71
MSH2-201ENST00000233146 PRR20EP86478 221 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 PRR20CP86479 221 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 PRR20DP86480 221 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 PRR20BP86481 221 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 PRR20AP86496 221 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 TCRBV4S1A1TA0A5B7 111 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 FAM90A27PA6NNH2 459 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 ACTL6BO94805 426 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 TCTAP57738 103 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 ZFAND6Q6FIF0 208 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 C16orf47Q6ZP98 133 aaPredicted RBP10.62□□□□□ -0.71
MSH2-201ENST00000233146 LINC00596Q86U02 117 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 ZBTB34Q8NCN2 500 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 ZNF837Q96EG3 531 aaPredicted RBP10.62□□□□□ -0.71
MSH2-201ENST00000233146 TMEM133Q9H2Q1 129 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 C7orf69Q9H7B7 122 aa10.62□□□□□ -0.71
MSH2-201ENST00000233146 SOX21Q9Y651 276 aaPredicted RBP10.62□□□□□ -0.71
MSH2-201ENST00000233146 H0Y8X5 98 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 CSN1S1P47710 185 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 ERVK11-1P61568 191 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 AMTNQ6UX39 209 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 ABHD12Q8N2K0 398 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 PRELID3AQ96N28 172 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 SPXQ9BT56 116 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 IL23AQ9NPF7 189 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 PRSS29PA6NIE9 313 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 C3orf80F5H4A9 247 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 THBDP07204 575 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 CA6P23280 308 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 MKXQ8IYA7 352 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 PLEKHA3Q9HB20 300 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 AP5S1Q9NUS5 200 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 NHP2Q9NX24 153 aaKnown RBP10.61□□□□□ -0.71
MSH2-201ENST00000233146 DLL3Q9NYJ7 618 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 Q6ZS92 163 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 TMEM178AQ8NBL3 297 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 UBALD1Q8TB05 177 aa10.61□□□□□ -0.71
MSH2-201ENST00000233146 GAGE12JA6NER3 117 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 C16orf97H3BN30 126 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 GAGE7O76087 117 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 GAGE12FP0CL80 117 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 GAGE12GP0CL81 117 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 GAGE12IP0CL82 117 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 NMUP48645 174 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 GAGE4Q13068 117 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 Q8TCH9 128 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 RAB1BQ9H0U4 201 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 POLDIP2Q9Y2S7 368 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 MT-CO3P00414 261 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 NFE4Q86UQ8 179 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 SLC37A2Q8TED4 501 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 CITED1Q99966 193 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 MYO15AQ9UKN7 3530 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 CSN3P07498 182 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 C3AR1Q16581 482 aa10.6□□□□□ -0.71
MSH2-201ENST00000233146 SRSF8Q9BRL6 282 aaKnown RBP10.6□□□□□ -0.71
MSH2-201ENST00000233146 MED12Q93074 2177 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms