RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 IGKV1-33P01594 117 aa11.52□□□□□ -0.57
CIITA-213ENST00000618327 HLA-DQA1P01909 254 aa11.52□□□□□ -0.57
CIITA-213ENST00000618327 UQCRFS1P47985 274 aa11.52□□□□□ -0.57
CIITA-213ENST00000618327 RELBQ01201 579 aa11.52□□□□□ -0.57
CIITA-213ENST00000618327 TEX29Q8N6K0 151 aa11.52□□□□□ -0.57
CIITA-213ENST00000618327 FAM208BQ5VWN6 2430 aa11.52□□□□□ -0.57
CIITA-213ENST00000618327 RNF224P0DH78 156 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 Q6ZS49 121 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 SLX1AQ9BQ83 275 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 CRIM1Q9NZV1 1036 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 OR4C46A6NHA9 309 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 NPIPB11E5RHQ5 1161 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 EFNA4P52798 201 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 HEPN1Q6WQI6 88 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 Q6ZR03 302 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 REC114Q7Z4M0 266 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 GGACTQ9BVM4 153 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 TGIF2-C20orf24A0A0A6YYL0 155 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 H0YIZ8 118 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 TRGC1P0CF51 173 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 PF4V1P10720 104 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 LEMD1Q68G75 181 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 ZNF256Q9Y2P7 627 aaPredicted RBP11.51□□□□□ -0.57
CIITA-213ENST00000618327 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.51□□□□□ -0.57
CIITA-213ENST00000618327 TCTAP57738 103 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 ZNF600Q6ZNG1 722 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 TMEM208Q9BTX3 173 aa11.51□□□□□ -0.57
CIITA-213ENST00000618327 IGHV3-48P01763 117 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 FHITP49789 147 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 NPIPB3Q92617 1050 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 GAFA1Q96PS6 74 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 C7orf69Q9H7B7 122 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 DNASE2O00115 360 aaPredicted RBP11.5□□□□□ -0.57
CIITA-213ENST00000618327 LEPROTL1O95214 131 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 SAA1P0DJI8 122 aaPredicted RBP11.5□□□□□ -0.57
CIITA-213ENST00000618327 MFAP4P55083 255 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 ID3Q02535 119 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 TMEM200BQ69YZ2 307 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 C20orf204Q6ZNR8 217 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 PSMG3Q9BT73 122 aaPredicted RBP11.5□□□□□ -0.57
CIITA-213ENST00000618327 MED13LQ71F56 2210 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 SLC25A34Q6PIV7 304 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 BIVMQ86UB2 503 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 PLAUP00749 431 aa11.5□□□□□ -0.57
CIITA-213ENST00000618327 IBA57Q5T440 356 aaKnown RBP11.5□□□□□ -0.57
CIITA-213ENST00000618327 LOC107984156A0A0G2JMH3 177 aa11.49□□□□□ -0.57
CIITA-213ENST00000618327 SNRPCP09234 159 aaKnown RBP11.49□□□□□ -0.57
CIITA-213ENST00000618327 PQLC2Q6ZP29 291 aa11.49□□□□□ -0.57
CIITA-213ENST00000618327 ARL17AQ8IVW1 177 aa11.49□□□□□ -0.57
CIITA-213ENST00000618327 AGAP20933 346 aa11.49□□□□□ -0.57
CIITA-213ENST00000618327 DNAJC4Q9NNZ3 241 aa11.49□□□□□ -0.57
CIITA-213ENST00000618327 CACNA1AO00555 2505 aa11.49□□□□□ -0.57
CIITA-213ENST00000618327 TMEM238LA0A1B0GVL6 79 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 A6NJY4 79 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 UPK2O00526 184 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 MOSP00540 346 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 MRPL18Q9H0U6 180 aaKnown RBP11.48□□□□□ -0.57
CIITA-213ENST00000618327 DKK4Q9UBT3 224 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 ACACBO00763 2458 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 WDR86Q86TI4 376 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 ZNF502Q8TBZ5 544 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 TNFRSF14Q92956 283 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 RNF166Q96A37 237 aaPredicted RBP11.48□□□□□ -0.57
CIITA-213ENST00000618327 AUP1Q9Y679 476 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 LOC389332A0A1B0GUA5 103 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 CRXO43186 299 aaPredicted RBP11.48□□□□□ -0.57
CIITA-213ENST00000618327 LOXL3P58215 753 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 OR4D5Q8NGN0 318 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 OR1N2Q8NGR9 330 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 RPRMQ9NS64 109 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 IGKV3-7A0A075B6H7 116 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 TGFAP01135 160 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 GCSHP23434 173 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 LRRC75BQ2VPJ9 315 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 ZNF841Q6ZN19 808 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 GBGT1Q8N5D6 347 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 RAB37Q96AX2 223 aa11.48□□□□□ -0.57
CIITA-213ENST00000618327 FREM1Q5H8C1 2179 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 TRAV30A0A087WSZ9 112 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 C15orf61A6NNL5 157 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 AREGP15514 252 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 STPG3Q8N7X2 389 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 IFI27L2Q9H2X8 130 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 PTPRQQ9UMZ3 2332 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 IGHV1-8P0DP01 117 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 COL8A2P25067 703 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 HERPUD1Q15011 391 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 RARRES2Q99969 163 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 NABP2Q9BQ15 211 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 NPCDR1Q9BY65 106 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 LY6HO94772 140 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 GATA4P43694 442 aa11.47□□□□□ -0.57
CIITA-213ENST00000618327 C8orf88P0DMB2 117 aa11.46□□□□□ -0.57
CIITA-213ENST00000618327 LMO1P25800 156 aa11.46□□□□□ -0.57
CIITA-213ENST00000618327 SPANXN1Q5VSR9 72 aa11.46□□□□□ -0.57
CIITA-213ENST00000618327 HOXA4Q00056 320 aaPredicted RBP11.46□□□□□ -0.57
CIITA-213ENST00000618327 J3KRW8 73 aa11.46□□□□□ -0.58
CIITA-213ENST00000618327 COX6CP09669 75 aa11.46□□□□□ -0.58
CIITA-213ENST00000618327 FOLR2P14207 255 aa11.46□□□□□ -0.58
CIITA-213ENST00000618327 KIAA1644Q3SXP7 199 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms