RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	S100G	P29377	79 aa		7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	NANOS2	P60321	138 aa	Known RBP	7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	TSPAN5	P62079	268 aa		7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	PRCD	Q00LT1	54 aa		7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	TCF24	Q7RTU0	167 aa		7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	ZNF114	Q8NC26	417 aa		7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	ST8SIA2	Q92186	375 aa		7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	TXN2	Q99757	166 aa		7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	COMMD3	Q9UBI1	195 aa		7.73	□□□□□ -1.17
LSM4-205	ENST00000597776	VPS13D	Q5THJ4	4388 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776		M0QYG6	137 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	DEFB4A	O15263	64 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	PI3	P19957	117 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	HSPE1	P61604	102 aa	Known RBP	7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	RNASE12	Q5GAN4	147 aa	Known RBP	7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	LPCAT3	Q6P1A2	487 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	TOMM20L	Q6UXN7	152 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	LILRB2	Q8N423	598 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	FAM24B	Q8N5W8	94 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	OR11H2	Q8NH07	326 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	CMTM3	Q96MX0	182 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	RARRES2	Q99969	163 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	FAM212B	Q9NTI7	297 aa	Predicted RBP	7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	FBXL17	Q9UF56	701 aa		7.72	□□□□□ -1.17
LSM4-205	ENST00000597776	ST8SIA3	O43173	380 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	HPGDS	O60760	199 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	CA1	P00915	261 aa	Predicted RBP	7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	IGKV1-5	P01602	117 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	RCVRN	P35243	200 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	UCP3	P55916	312 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	NCS1	P62166	190 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	ERH	P84090	104 aa	Known RBP	7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	LEMD1	Q68G75	181 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	GATAD1	Q8WUU5	269 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	GINS3	Q9BRX5	216 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	MS4A6A	Q9H2W1	248 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	ZFAND3	Q9H8U3	227 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	SCPEP1	Q9HB40	452 aa		7.71	□□□□□ -1.18
LSM4-205	ENST00000597776	PUS1	Q9Y606	427 aa	Known RBP eCLIP	7.71	□□□□□ -1.18
LSM4-205	ENST00000597776		A0A0B4J293	547 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776		A0A1B0GU03	582 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	SMIM31	A0A1B0GVY4	71 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	DFFB	O76075	338 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	APOA1	P02647	267 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	PGAM2	P15259	253 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	ELK1	P19419	428 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	CMC4	P56277	68 aa	Predicted RBP	7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	DEFB131A	P59861	70 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	VBP1	P61758	197 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	RPL11	P62913	178 aa	Known RBP	7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	PAFAH1B2	P68402	229 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	RBMS2	Q15434	407 aa	Known RBP	7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	C11orf45	Q8TAV5	145 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	TP53RK	Q96S44	253 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	C11orf68	Q9H3H3	251 aa	Known RBP	7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	VSIR	Q9H7M9	311 aa		7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	MRPL36	Q9P0J6	103 aa	Known RBP	7.7	□□□□□ -1.18
LSM4-205	ENST00000597776	DNASE2	O00115	360 aa	Predicted RBP	7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	IFNA17	P01571	189 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776		P0C879	139 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	SNCA	P37840	140 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	NPBWR1	P48145	328 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	AKR1C2	P52895	323 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	PIGP	P57054	158 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	TMEM187	Q14656	261 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	LGALS9C	Q6DKI2	356 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	ZNF600	Q6ZNG1	722 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	SLC35G3	Q8N808	338 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	DUSP18	Q8NEJ0	188 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	KRTAP17-1	Q9BYP8	105 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	VCX3A	Q9NNX9	186 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	KLK11	Q9UBX7	282 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776	HECTD4	Q9Y4D8	3996 aa		7.69	□□□□□ -1.18
LSM4-205	ENST00000597776		A0A087WXM4	84 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776		A0A0G2JRQ6	117 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	TMEM50A	O95807	157 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	RNASE2	P10153	161 aa	Known RBP	7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	ETV6	P41212	452 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	HOXA1	P49639	335 aa	Predicted RBP	7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	PPP5C	P53041	499 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	RND3	P61587	244 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	PRR20E	P86478	221 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	PRR20C	P86479	221 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	PRR20D	P86480	221 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	PRR20B	P86481	221 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	PRR20A	P86496	221 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	MLANA	Q16655	118 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	SP6	Q3SY56	376 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	RNASE10	Q5GAN6	216 aa	Known RBP	7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	PVRIG	Q6DKI7	326 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	FUNDC2	Q9BWH2	189 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	MFF	Q9GZY8	342 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	FNDC4	Q9H6D8	234 aa	Predicted RBP	7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	RABAC1	Q9UI14	185 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	HERC2	O95714	4834 aa		7.68	□□□□□ -1.18
LSM4-205	ENST00000597776	DNAH6	Q9C0G6	4158 aa		7.67	□□□□□ -1.18
LSM4-205	ENST00000597776	C3orf85	A0A1B0GTC6	90 aa		7.67	□□□□□ -1.18
LSM4-205	ENST00000597776	FAM25A	B3EWG3	89 aa		7.67	□□□□□ -1.18
LSM4-205	ENST00000597776	FAM25C	B3EWG5	89 aa		7.67	□□□□□ -1.18
LSM4-205	ENST00000597776	FAM25G	B3EWG6	89 aa		7.67	□□□□□ -1.18

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