RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PRR13Q9NZ81 148 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 SHPKQ9UHJ6 478 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 F11RQ9Y624 299 aaKnown RBP9.47□□□□□ -0.89
UPF1-203ENST00000594504 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.46□□□□□ -0.9
UPF1-203ENST00000594504 DUXBA0A1W2PPF3 345 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 INS-IGF2F8WCM5 200 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 NDUFB8O95169 186 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 SFT2D2O95562 160 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 EDN2P20800 178 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 ERHP84090 104 aaKnown RBP9.46□□□□□ -0.9
UPF1-203ENST00000594504 RPEL1Q2QD12 228 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 Q6ZRM9 215 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 LYZL2Q7Z4W2 148 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 OR2C3Q8N628 320 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 LRTM2Q8N967 370 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 ZNF114Q8NC26 417 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 OR1P1Q8NH06 330 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 EEF1AKMT3Q96AZ1 226 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 CXorf58Q96LI9 332 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 TUBA4BQ9H853 241 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 RETNQ9HD89 108 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 CACNG5Q9UF02 275 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 CACFD1Q9UGQ2 172 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 DMRT1Q9Y5R6 373 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 SELENOKQ9Y6D0 94 aa9.46□□□□□ -0.9
UPF1-203ENST00000594504 TRBV7-1A0A0A6YYK4 115 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 SULT1A3P0DMM9 295 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 SULT1A4P0DMN0 295 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 HOXA1P49639 335 aaPredicted RBP9.45□□□□□ -0.9
UPF1-203ENST00000594504 SPCS3P61009 180 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 TATDN3Q17R31 274 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 ANKRD55Q3KP44 614 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 SPINK9Q5DT21 86 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 NMSQ5H8A3 153 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 SLC25A24Q6NUK1 477 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 OR52E5Q8NH55 327 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 VN1R17PQ8TDU5 208 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 CCDC140Q96MF4 163 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 SPATA25Q9BR10 227 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 ENY2Q9NPA8 101 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 FLVCR2Q9UPI3 526 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 TENM2Q9NT68 2774 aa9.45□□□□□ -0.9
UPF1-203ENST00000594504 C9orf170A2RU37 121 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 MFSD2BA6NFX1 497 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 BMPR1BO00238 502 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 UPK1BO75841 260 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 HLA-AP01891 365 aaKnown RBP9.44□□□□□ -0.9
UPF1-203ENST00000594504 SNCAP37840 140 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 MFAP2P55001 183 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 ASAH1Q13510 395 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 SMCO1Q147U7 214 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 MZT2BQ6NZ67 158 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 FAM110AQ9BQ89 295 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 C20orf85Q9H1P6 137 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 TBC1D24Q9ULP9 559 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 DNAH7Q8WXX0 4024 aa9.44□□□□□ -0.9
UPF1-203ENST00000594504 TENM3Q9P273 2699 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 DYNC2H1Q8NCM8 4307 aaKnown RBP9.43□□□□□ -0.9
UPF1-203ENST00000594504 A0A1B0GU03 582 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 ZNF785A8K8V0 405 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 GGCTO75223 188 aaKnown RBP9.43□□□□□ -0.9
UPF1-203ENST00000594504 IGHV3-23P01764 117 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 TCRBP04435 133 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 CD7P09564 240 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 OR4E1P0C645 316 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 ANXA7P20073 488 aaKnown RBP9.43□□□□□ -0.9
UPF1-203ENST00000594504 DHRS2Q13268 280 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 C4orf46Q504U0 113 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 LCN12Q6JVE5 192 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 CLEC19AQ6UXS0 136 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 LYG2Q86SG7 212 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 GTSCR1Q86UQ5 136 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 ZNF502Q8TBZ5 544 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 ATP6V0BQ99437 205 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 SIGLEC8Q9NYZ4 499 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 TMED3Q9Y3Q3 217 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 S4R3C0 116 aa9.43□□□□□ -0.9
UPF1-203ENST00000594504 CEBPZOSA8MTT3 80 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 PPP5D1E7EU14 171 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 K7EIM0 57 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 SLC25A6P12236 298 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 ARL3P36405 182 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 SUB1P53999 127 aaKnown RBP eCLIP9.42□□□□□ -0.9
UPF1-203ENST00000594504 CD81P60033 236 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 TNFRSF9Q07011 255 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 CD300EQ496F6 205 aaPredicted RBP9.42□□□□□ -0.9
UPF1-203ENST00000594504 LINC00322Q6ZN03 302 aaPredicted RBP9.42□□□□□ -0.9
UPF1-203ENST00000594504 DEFB125Q8N687 156 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 COQ8AQ8NI60 647 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 WFDC10AQ9H1F0 79 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 NUDT15Q9NV35 164 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 C21orf62Q9NYP8 219 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 PEMTQ9UBM1 199 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 HSPB7Q9UBY9 170 aa9.42□□□□□ -0.9
UPF1-203ENST00000594504 SACSQ9NZJ4 4579 aa9.41□□□□□ -0.9
UPF1-203ENST00000594504 FAM240BA0A1B0GVZ2 78 aa9.41□□□□□ -0.9
UPF1-203ENST00000594504 CORTO00230 105 aa9.41□□□□□ -0.9
UPF1-203ENST00000594504 OR2C1O95371 312 aa9.41□□□□□ -0.9
UPF1-203ENST00000594504 CLEC3BP05452 202 aa9.41□□□□□ -0.9
UPF1-203ENST00000594504 RNASE2P10153 161 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms