RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 NIPSNAP3BQ9BS92 247 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 SMCO4Q9NRQ5 59 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 NAV3Q8IVL0 2385 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 TMEM250H0YL14 139 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 TSPAN4O14817 238 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 STAG3L2P0CL84 134 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 STAG3L3P0CL85 134 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 RNF224P0DH78 156 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 DSCR9P59020 149 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 EBI3Q14213 229 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 SSX2Q16385 188 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 AWAT1Q58HT5 328 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 C22orf15Q8WYQ4 148 aa11.35□□□□□ -0.59
LIG3-205ENST00000585941 EAF1Q96JC9 268 aaPredicted RBP11.35□□□□□ -0.59
LIG3-205ENST00000585941 PLXNB1O43157 2135 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 ZFYVE26Q68DK2 2539 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 C7orf77A4D0Y5 90 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 H3BQ15 152 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 HMGB3O15347 200 aaKnown RBP11.34□□□□□ -0.59
LIG3-205ENST00000585941 NUPL2O15504 423 aaKnown RBP11.34□□□□□ -0.59
LIG3-205ENST00000585941 LINC00869P0C866 280 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 COX6B1P14854 86 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 OR10J1P30954 320 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 ATP5J2P56134 94 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 SELENOTP62341 195 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 GNB1P62873 340 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 GCSAMLQ5JQS6 135 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 THAP8Q8NA92 274 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 OR1L6Q8NGR2 347 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 SRSF12Q8WXF0 261 aaKnown RBP11.34□□□□□ -0.59
LIG3-205ENST00000585941 TBX15Q96SF7 602 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 RNF2Q99496 336 aa11.34□□□□□ -0.59
LIG3-205ENST00000585941 ZNF462Q96JM2 2506 aa11.33□□□□□ -0.59
LIG3-205ENST00000585941 IGKV1OR2-108A0A075B7D4 117 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 VWC2LB2RUY7 222 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 TEX22C9J3V5 150 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 CNIH1O95406 144 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 CRYGCP07315 174 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 PAX1P15863 534 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 CEBPGP53567 150 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 PNRC1Q12796 327 aaPredicted RBP11.33□□□□□ -0.6
LIG3-205ENST00000585941 HES1Q14469 280 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 IQCF2Q8IXL9 164 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 TVP23CQ96ET8 276 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 ACY3Q96HD9 319 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 TUBA4BQ9H853 241 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 RPS10P5Q9NQ39 176 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 PUS1Q9Y606 427 aaKnown RBP eCLIP11.33□□□□□ -0.6
LIG3-205ENST00000585941 F11RQ9Y624 299 aaKnown RBP11.33□□□□□ -0.6
LIG3-205ENST00000585941 A0A1W2PRD5 423 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 A0A1W2PRF3 423 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 A0A1W2PRM7 423 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 B4DEV8 164 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 FBP1P09467 338 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 PAX6P26367 422 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 BRS3P32247 399 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 C5orf64Q2M2E5 130 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 FAM90A2PQ658T7 463 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 TMEM88Q6PEY1 159 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 CYP2G1PQ6ZSU1 146 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 TMPRSS5Q9H3S3 457 aa11.33□□□□□ -0.6
LIG3-205ENST00000585941 FNDC4Q9H6D8 234 aaPredicted RBP11.33□□□□□ -0.6
LIG3-205ENST00000585941 TACC2O95359 2948 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 PDE6DO43924 150 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 FAM106CPP0CH98 169 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 ARL14EPLP0DKL9 152 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 AREGP15514 252 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 TAS2R45P59539 299 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 CD81P60033 236 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 MLANAQ16655 118 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 SPNS3Q6ZMD2 512 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 CBLN2Q8IUK8 224 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 Q8N6K4 173 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 OR2T6Q8NHC8 308 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 ABHD5Q8WTS1 349 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 GATAD1Q8WUU5 269 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 C1RLQ9NZP8 487 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 FUT9Q9Y231 359 aa11.32□□□□□ -0.6
LIG3-205ENST00000585941 A0A087WWC5 75 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 TCRBV4S1A1TA0A5B7 111 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 FCN1O00602 326 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 PAGE4O60829 102 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 REG1AP05451 166 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 SSBP2P81877 361 aaPredicted RBP11.31□□□□□ -0.6
LIG3-205ENST00000585941 PAX8Q06710 450 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 TMEM116Q8NCL8 245 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 OR1L4Q8NGR5 311 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 NPIPB3Q92617 1050 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 MISP3Q96FF7 219 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 PFDN5Q99471 154 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 MRPL32Q9BYC8 188 aaKnown RBP11.31□□□□□ -0.6
LIG3-205ENST00000585941 ARL2-SNX15V9GYD0 113 aa11.31□□□□□ -0.6
LIG3-205ENST00000585941 CLN5O75503 358 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 EIF3GO75821 320 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIG3-205ENST00000585941 OR5G3P0C626 314 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 DEFA4P12838 97 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 AKIRIN2Q53H80 203 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 FAM78BQ5VT40 261 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 ZNF562Q6V9R5 426 aa11.3□□□□□ -0.6
LIG3-205ENST00000585941 C15orf54Q8N8G6 183 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms