RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZNF114Q8NC26 417 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 MISP3Q96FF7 219 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 FANCD2OSQ96PS1 177 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 PVRIGQ6DKI7 326 aa19.69■□□□□ 0.74
SHMT1-207ENST00000580002 OR1P1Q8NH06 330 aa19.69■□□□□ 0.74
SHMT1-207ENST00000580002 MRPL36Q9P0J6 103 aaKnown RBP19.69■□□□□ 0.74
SHMT1-207ENST00000580002 NPIPB5A8MRT5 1133 aa19.68■□□□□ 0.74
SHMT1-207ENST00000580002 ARSJQ5FYB0 599 aaPredicted RBP19.68■□□□□ 0.74
SHMT1-207ENST00000580002 STPG2Q8N412 459 aa19.68■□□□□ 0.74
SHMT1-207ENST00000580002 OR2T6Q8NHC8 308 aa19.68■□□□□ 0.74
SHMT1-207ENST00000580002 TRAV41A0A0B4J266 112 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 DEFA4P12838 97 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 HSD17B13Q7Z5P4 300 aaPredicted RBP19.67■□□□□ 0.74
SHMT1-207ENST00000580002 LILRB2Q8N423 598 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 S4R3C0 116 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 TRIM77I1YAP6 450 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 CRLF1O75462 422 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 IGF1P05019 195 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 AKIRIN2Q53H80 203 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 ATP5SQ99766 215 aa19.67■□□□□ 0.74
SHMT1-207ENST00000580002 SUB1P53999 127 aaKnown RBP eCLIP19.66■□□□□ 0.74
SHMT1-207ENST00000580002 HBG1P69891 147 aa19.66■□□□□ 0.74
SHMT1-207ENST00000580002 HBG2P69892 147 aa19.66■□□□□ 0.74
SHMT1-207ENST00000580002 C10orf99Q6UWK7 81 aa19.66■□□□□ 0.74
SHMT1-207ENST00000580002 MRPL41Q8IXM3 137 aaKnown RBP19.66■□□□□ 0.74
SHMT1-207ENST00000580002 ZNF418Q8TF45 676 aaPredicted RBP19.66■□□□□ 0.74
SHMT1-207ENST00000580002 CRIP2P52943 208 aaPredicted RBP19.65■□□□□ 0.74
SHMT1-207ENST00000580002 HILS1P60008 231 aa19.65■□□□□ 0.74
SHMT1-207ENST00000580002 FAM110DQ8TAY7 271 aaPredicted RBP19.65■□□□□ 0.74
SHMT1-207ENST00000580002 MS4A10Q96PG2 267 aa19.65■□□□□ 0.74
SHMT1-207ENST00000580002 PRSS22Q9GZN4 317 aa19.65■□□□□ 0.74
SHMT1-207ENST00000580002 NPFFR1Q9GZQ6 430 aa19.65■□□□□ 0.74
SHMT1-207ENST00000580002 UBE2L5PA0A1B0GUS4 154 aa19.65■□□□□ 0.74
SHMT1-207ENST00000580002 SMCO3A2RU48 225 aa19.65■□□□□ 0.74
SHMT1-207ENST00000580002 TAAR5O14804 337 aa19.65■□□□□ 0.74
SHMT1-207ENST00000580002 CD69Q07108 199 aa19.65■□□□□ 0.74
SHMT1-207ENST00000580002 IGLV11-55A0A075B6I3 123 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 MT-CO2P00403 227 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 FAM157CP0CG43 387 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 OPRK1P41145 380 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 UBA52P62987 128 aaKnown RBP19.64■□□□□ 0.73
SHMT1-207ENST00000580002 RUNX1Q01196 453 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 SCGB2A2Q13296 93 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 GAMTQ14353 236 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 ZNF329Q86UD4 541 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 SLC51BQ86UW2 128 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 HSD17B11Q8NBQ5 300 aa19.64■□□□□ 0.73
SHMT1-207ENST00000580002 OR2J3O76001 311 aa19.63■□□□□ 0.73
SHMT1-207ENST00000580002 NDUFB8O95169 186 aa19.63■□□□□ 0.73
SHMT1-207ENST00000580002 PPIFP30405 207 aaKnown RBP19.63■□□□□ 0.73
SHMT1-207ENST00000580002 ATP5IP56385 69 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-207ENST00000580002 LCNL1Q6ZST4 164 aa19.63■□□□□ 0.73
SHMT1-207ENST00000580002 ST8SIA2Q92186 375 aa19.63■□□□□ 0.73
SHMT1-207ENST00000580002 TMEM147Q9BVK8 224 aa19.63■□□□□ 0.73
SHMT1-207ENST00000580002 ZNF355PQ9NSJ1 428 aa19.63■□□□□ 0.73
SHMT1-207ENST00000580002 I3L2K1 104 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 K7EIM0 57 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 AP4M1O00189 453 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 Q6ZSV7 163 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 RNASEH2CQ8TDP1 164 aaKnown RBP19.62■□□□□ 0.73
SHMT1-207ENST00000580002 SH3BGRL3Q9H299 93 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 UQCC1Q9NVA1 299 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 PLA2G2EQ9NZK7 142 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 NIPBLQ6KC79 2804 aaeCLIP19.62■□□□□ 0.73
SHMT1-207ENST00000580002 CLDN34H7C241 214 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 DLK1P80370 383 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 VWC2Q2TAL6 325 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 SLC16A13Q7RTY0 426 aa19.62■□□□□ 0.73
SHMT1-207ENST00000580002 IGHV3-23P01764 117 aa19.61■□□□□ 0.73
SHMT1-207ENST00000580002 RNASE1P07998 156 aaKnown RBP19.61■□□□□ 0.73
SHMT1-207ENST00000580002 TREML4Q6UXN2 200 aa19.61■□□□□ 0.73
SHMT1-207ENST00000580002 IGKV1OR2-108A0A075B7D4 117 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 CFHR3Q02985 330 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 ATP6V1FQ16864 119 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 UBAC2Q8NBM4 344 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 ACY3Q96HD9 319 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 RSG1Q9BU20 258 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 KLK15Q9H2R5 256 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 SERTAD4Q9NUC0 356 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 MFSD2BA6NFX1 497 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 DFFBO76075 338 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 JTBO76095 146 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 C4BPBP20851 252 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 MDKP21741 143 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-207ENST00000580002 ALKAL2Q6UX46 152 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 BAP18Q8IXM2 172 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 Q8N2B8 174 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 NPIPB3Q92617 1050 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 TMEM68Q96MH6 324 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 WDR61Q9GZS3 305 aaKnown RBP19.6■□□□□ 0.73
SHMT1-207ENST00000580002 ARV1Q9H2C2 271 aa19.6■□□□□ 0.73
SHMT1-207ENST00000580002 STOML3Q8TAV4 291 aa19.59■□□□□ 0.73
SHMT1-207ENST00000580002 SCARB1Q8WTV0 552 aa19.59■□□□□ 0.73
SHMT1-207ENST00000580002 FBXL7Q9UJT9 491 aa19.59■□□□□ 0.73
SHMT1-207ENST00000580002 BORCS7-ASMTA0A0B4J1R7 106 aa19.58■□□□□ 0.73
SHMT1-207ENST00000580002 ATP6V0CP27449 155 aa19.58■□□□□ 0.73
SHMT1-207ENST00000580002 GPX4P36969 197 aaPredicted RBP19.58■□□□□ 0.73
SHMT1-207ENST00000580002 TEX261Q6UWH6 196 aa19.58■□□□□ 0.73
SHMT1-207ENST00000580002 GON7Q9BXV9 100 aa19.58■□□□□ 0.73
SHMT1-207ENST00000580002 TRBV9A0A0B4J1U6 114 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms