RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 IGKV1-39P01597 117 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 IGKV1D-39P04432 117 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 NAT1P18440 290 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 PI3P19957 117 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 DEFB131AP59861 70 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 PRR20EP86478 221 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 PRR20CP86479 221 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 PRR20DP86480 221 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 PRR20BP86481 221 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 PRR20AP86496 221 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 RNASE12Q5GAN4 147 aaKnown RBP6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 FAM90A2PQ658T7 463 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 TOMM20LQ6UXN7 152 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 SNX29P2Q8IUI4 249 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 FAM24BQ8N5W8 94 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 SEC22AQ96IW7 307 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 OR10C1Q96KK4 312 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 CMTM3Q96MX0 182 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 ATP6V0BQ99437 205 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 TSC22D3Q99576 134 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 NXF2Q9GZY0 626 aaKnown RBP6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 COMMD3Q9UBI1 195 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 KMT2AQ03164 3969 aa6.31□□□□□ -1.4
CTDNEP1-203ENST00000570385 M0QYG6 137 aa6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 DNASE2O00115 360 aaPredicted RBP6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 IFNA4P05014 189 aa6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 ATF4P18848 351 aaPredicted RBP6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 S100GP29377 79 aa6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 HSPE1P61604 102 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 ERHP84090 104 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 PRCDQ00LT1 54 aa6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 RBMS2Q15434 407 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 GPX8Q8TED1 209 aa6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 MS4A6AQ9H2W1 248 aa6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 PUS1Q9Y606 427 aaKnown RBP eCLIP6.3□□□□□ -1.4
CTDNEP1-203ENST00000570385 A0A1B0GU03 582 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 PGAM2P15259 253 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 ETV6P41212 452 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 CMC4P56277 68 aaPredicted RBP6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 PAFAH1B2P68402 229 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 TMEM187Q14656 261 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 MLANAQ16655 118 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 KCTD21Q4G0X4 260 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 LGALS9CQ6DKI2 356 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 LPCAT3Q6P1A2 487 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 CROCCP3Q8IVE0 287 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 CADM3Q8N126 398 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 DUSP18Q8NEJ0 188 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 GATAD1Q8WUU5 269 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 YIPF6Q96EC8 236 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 TXN2Q99757 166 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 GINS3Q9BRX5 216 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 MRPL36Q9P0J6 103 aaKnown RBP6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 RABAC1Q9UI14 185 aa6.29□□□□□ -1.4
CTDNEP1-203ENST00000570385 VPS13DQ5THJ4 4388 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 SMIM31A0A1B0GVY4 71 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 KNCNA6PVL3 124 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 IGLL5B9A064 214 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 HPGDSO60760 199 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 TMEM127O75204 238 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 TMEM50AO95807 157 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 IFNA17P01571 189 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 IGKV1-5P01602 117 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 SNCAP37840 140 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 NPBWR1P48145 328 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 PPP5CP53041 499 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 NCS1P62166 190 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 SP6Q3SY56 376 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 SLC35G3Q8N808 338 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 ZNF114Q8NC26 417 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 STXBP6Q8NFX7 210 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 C2CD4CQ8TF44 421 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 TP53RKQ96S44 253 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 MFFQ9GZY8 342 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 VSIRQ9H7M9 311 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 ZFAND3Q9H8U3 227 aa6.28□□□□□ -1.4
CTDNEP1-203ENST00000570385 A0A0B4J293 547 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 ELK1P19419 428 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 RCVRNP35243 200 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 HOXA1P49639 335 aaPredicted RBP6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 AKR1C2P52895 323 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 PIGPP57054 158 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 VBP1P61758 197 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 ZNF600Q6ZNG1 722 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 STHQ8IWL8 128 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 C11orf68Q9H3H3 251 aaKnown RBP6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 FNDC4Q9H6D8 234 aaPredicted RBP6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 CLEC5AQ9NY25 188 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 KLK11Q9UBX7 282 aa6.27□□□□□ -1.41
CTDNEP1-203ENST00000570385 IGHV4-28A0A0C4DH34 117 aa6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 A0A0G2JRQ6 117 aa6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 FAM25AB3EWG3 89 aa6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 FAM25CB3EWG5 89 aa6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 FAM25GB3EWG6 89 aa6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 APOA1P02647 267 aa6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 GIG44P09565 113 aaPredicted RBP6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 ZNF688P0C7X2 276 aa6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 RBMY1A1P0DJD3 496 aaKnown RBP6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 RBMY1CP0DJD4 496 aa6.26□□□□□ -1.41
CTDNEP1-203ENST00000570385 RNASE2P10153 161 aaKnown RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms