RNA–Protein interactions for RNA: ENST00000542552.1

ECHDC2-223, Transcript of enoyl-CoA hydratase domain containing 2, human

TSL 1 (best)

Gene ECHDC2, Length 981 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-223	ENST00000542552	CHRDL1	Q9BU40	450 aa		11.68	□□□□□ -0.54
ECHDC2-223	ENST00000542552	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	11.68	□□□□□ -0.54
ECHDC2-223	ENST00000542552	TECR	Q9NZ01	308 aa	Known RBP	11.68	□□□□□ -0.54
ECHDC2-223	ENST00000542552	KCNIP3	Q9Y2W7	256 aa		11.68	□□□□□ -0.54
ECHDC2-223	ENST00000542552	ZNF320	A2RRD8	509 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	ZNF785	A8K8V0	405 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552		A8MZ25	164 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	CTSG	P08311	255 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	C8orf88	P0DMB2	117 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	AKR1C4	P17516	323 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	ADM	P35318	185 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	ELL	P55199	621 aa	Predicted RBP	11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	SPCS3	P61009	180 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	BSX	Q3C1V8	233 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	SLC35G3	Q8N808	338 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	RNASE11	Q8TAA1	199 aa	Known RBP	11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	CACNG8	Q8WXS5	425 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	TXN2	Q99757	166 aa		11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	SLC25A21	Q9BQT8	299 aa	Predicted RBP	11.67	□□□□□ -0.54
ECHDC2-223	ENST00000542552	IGHV3-35	A0A0C4DH35	117 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	MT-CO2	P00403	227 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	RNASE2	P10153	161 aa	Known RBP	11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	SNCA	P37840	140 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	BAK1	Q16611	211 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	TM4SF20	Q53R12	229 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	TMEM190	Q8WZ59	177 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	MISP3	Q96FF7	219 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	SDHC	Q99643	169 aa	Predicted RBP	11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	PDCD10	Q9BUL8	212 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	PALMD	Q9NP74	551 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	GAR1	Q9NY12	217 aa	Known RBP	11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	PRR13	Q9NZ81	148 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	CACNG5	Q9UF02	275 aa		11.66	□□□□□ -0.54
ECHDC2-223	ENST00000542552	DNAH7	Q8WXX0	4024 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	NDUFA4	O00483	81 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	FRMD6-AS1	P0C7T7	363 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	IGHV4-30-4	P0DP06	118 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	MFAP4	P55083	255 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	TMEM128	Q5BJH2	165 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	NMS	Q5H8A3	153 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	UXS1	Q8NBZ7	420 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	DYNLRB2	Q8TF09	96 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	MARC2	Q969Z3	335 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	C19orf73	Q9NVV2	129 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	MLX	Q9UH92	298 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552	UFC1	Q9Y3C8	167 aa		11.65	□□□□□ -0.54
ECHDC2-223	ENST00000542552		A0A0B4J2A0	478 aa		11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	HOXA1	P49639	335 aa	Predicted RBP	11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SRPX	P78539	464 aa		11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552		Q56UQ5	140 aa		11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	ZNF57	Q68EA5	555 aa	Predicted RBP	11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	LYZL2	Q7Z4W2	148 aa		11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SBSPON	Q8IVN8	264 aa		11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	UBAC2	Q8NBM4	344 aa		11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	ASCL2	Q99929	193 aa		11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	MRPL27	Q9P0M9	148 aa	Known RBP	11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SHPK	Q9UHJ6	478 aa		11.64	□□□□□ -0.55
ECHDC2-223	ENST00000542552	IGHV3-48	P01763	117 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SULT1A3	P0DMM9	295 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SULT1A4	P0DMN0	295 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	ANXA3	P12429	323 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SUB1	P53999	127 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	TMED4	Q7Z7H5	227 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	GTSCR1	Q86UQ5	136 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	TMEM61	Q8N0U2	210 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	LGI3	Q8N145	548 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	PINX1	Q96BK5	328 aa	Known RBP	11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	ENY2	Q9NPA8	101 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	DAZ1	Q9NQZ3	744 aa	Known RBP	11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	CACFD1	Q9UGQ2	172 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552	NBEAL2	Q6ZNJ1	2754 aa		11.63	□□□□□ -0.55
ECHDC2-223	ENST00000542552		K7EMT4	169 aa		11.62	□□□□□ -0.55
ECHDC2-223	ENST00000542552	CORT	O00230	105 aa		11.62	□□□□□ -0.55
ECHDC2-223	ENST00000542552	NUPL2	O15504	423 aa	Known RBP	11.62	□□□□□ -0.55
ECHDC2-223	ENST00000542552	HTR2B	P41595	481 aa		11.62	□□□□□ -0.55
ECHDC2-223	ENST00000542552	LRTM2	Q8N967	370 aa		11.62	□□□□□ -0.55
ECHDC2-223	ENST00000542552	WDR89	Q96FK6	387 aa	Predicted RBP	11.62	□□□□□ -0.55
ECHDC2-223	ENST00000542552	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.62	□□□□□ -0.55
ECHDC2-223	ENST00000542552	HSPB7	Q9UBY9	170 aa		11.62	□□□□□ -0.55
ECHDC2-223	ENST00000542552	TRAV25	A0A0B4J276	109 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	PIGBOS1	A0A0B4J2F0	54 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	DUXB	A0A1W2PPF3	345 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	NAP1L6	A6NFF2	107 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	C15orf62	A8K5M9	175 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	CCR6	P51684	374 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	REL	Q04864	619 aa	Predicted RBP	11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SMCO1	Q147U7	214 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	RBMS2	Q15434	407 aa	Known RBP	11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	ANKRD55	Q3KP44	614 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	TRIQK	Q629K1	86 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	BTNL8	Q6UX41	500 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	TMEM170A	Q8WVE7	144 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	OR10C1	Q96KK4	312 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	HEYL	Q9NQ87	328 aa	Predicted RBP	11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SELENOK	Q9Y6D0	94 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552		U3KQK5	164 aa		11.61	□□□□□ -0.55
ECHDC2-223	ENST00000542552		A0A1B0GU03	582 aa		11.6	□□□□□ -0.55
ECHDC2-223	ENST00000542552	GNG7	O60262	68 aa		11.6	□□□□□ -0.55
ECHDC2-223	ENST00000542552	NDUFB6	O95139	128 aa		11.6	□□□□□ -0.55
ECHDC2-223	ENST00000542552	SFT2D2	O95562	160 aa		11.6	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms