RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PRB3Q04118 309 aaPredicted RBP8.79□□□□□ -1
CLIP1-213ENST00000540338 PMS2P11Q13670 270 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 TEX45Q8NA69 505 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 DDB2Q92466 427 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 SEPSECSQ9HD40 501 aaKnown RBP8.79□□□□□ -1
CLIP1-213ENST00000540338 TRBV24-1A0A075B6N3 115 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 FCN1O00602 326 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 SCGB1D1O95968 90 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 CGB3P0DN86 165 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 CGB7P0DN87 165 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 GAMTQ14353 236 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 TMEM155Q4W5P6 130 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 C10orf55Q5SWW7 151 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 FBXL15Q9H469 300 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 CBLN4Q9NTU7 201 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 DPM3Q9P2X0 92 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 EYSQ5T1H1 3165 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 IGHV2-26A0A0B4J1V2 119 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 UBE2CO00762 179 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 SPINK4O60575 86 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 COL8A2P25067 703 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 LOXP28300 417 aaPredicted RBP8.79□□□□□ -1
CLIP1-213ENST00000540338 RANP62826 216 aaKnown RBP8.79□□□□□ -1
CLIP1-213ENST00000540338 OR5AN1Q8NGI8 311 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 SCRT1Q9BWW7 348 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 THYN1Q9P016 225 aa8.79□□□□□ -1
CLIP1-213ENST00000540338 SHISA9B4DS77 424 aa8.78□□□□□ -1
CLIP1-213ENST00000540338 GATCO43716 136 aaKnown RBP8.78□□□□□ -1
CLIP1-213ENST00000540338 GPR61Q9BZJ8 451 aa8.78□□□□□ -1
CLIP1-213ENST00000540338 OR51M1Q9H341 326 aa8.78□□□□□ -1
CLIP1-213ENST00000540338 RNASE2P10153 161 aaKnown RBP8.78□□□□□ -1
CLIP1-213ENST00000540338 HOXA5P20719 270 aa8.78□□□□□ -1
CLIP1-213ENST00000540338 ZNF439Q8NDP4 499 aa8.78□□□□□ -1
CLIP1-213ENST00000540338 NAT8BQ9UHF3 227 aa8.78□□□□□ -1
CLIP1-213ENST00000540338 SNRPCP09234 159 aaKnown RBP8.78□□□□□ -1
CLIP1-213ENST00000540338 SPATA31B1PQ5VZV4 182 aa8.78□□□□□ -1
CLIP1-213ENST00000540338 PACRGQ96M98 296 aaPredicted RBP8.78□□□□□ -1
CLIP1-213ENST00000540338 KAAG1Q9UBP8 84 aa8.78□□□□□ -1
CLIP1-213ENST00000540338 LCN2P80188 198 aa8.77□□□□□ -1
CLIP1-213ENST00000540338 Q56UQ5 140 aa8.77□□□□□ -1
CLIP1-213ENST00000540338 LINC00311Q8N616 119 aa8.77□□□□□ -1
CLIP1-213ENST00000540338 OR4F17Q8NGA8 305 aa8.77□□□□□ -1
CLIP1-213ENST00000540338 OR1L6Q8NGR2 347 aa8.77□□□□□ -1
CLIP1-213ENST00000540338 SRRM4A7MD48 611 aaKnown RBP8.77□□□□□ -1.01
CLIP1-213ENST00000540338 SSBP3Q9BWW4 388 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-213ENST00000540338 C1RLQ9NZP8 487 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIGD1AQ9Y241 93 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 SPTBN1Q01082 2364 aaKnown RBP8.77□□□□□ -1.01
CLIP1-213ENST00000540338 PTPRQQ9UMZ3 2332 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 GNG7O60262 68 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 CD99P14209 185 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 MAS1LP35410 378 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 TCL1AP56279 114 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 USF2Q15853 346 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-213ENST00000540338 PPP1R27Q86WC6 154 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 BORCS7Q96B45 105 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 PIEZO2Q9H5I5 2752 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 MALRD1Q5VYJ5 2156 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BKO60814 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 MOSP00540 346 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BJP06899 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BOP23527 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 BRS3P32247 399 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BBP33778 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BDP58876 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BCP62807 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 DEFA6Q01524 100 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST2H2BEQ16778 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-213ENST00000540338 WDR73Q6P4I2 378 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BHQ93079 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BNQ99877 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H2BMQ99879 126 aa8.77□□□□□ -1.01
CLIP1-213ENST00000540338 C1QTNF9P0C862 333 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 CSN1S1P47710 185 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 SSX2Q16385 188 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 MLANAQ16655 118 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 COX19Q49B96 90 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 CENPWQ5EE01 88 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 RD3LP0DJH9 198 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 PRSS8Q16651 343 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 LINC00305Q7Z4B0 112 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 LINC01551Q86U37 167 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 PGPEP1LA6NFU8 196 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 HIST1H1BP16401 226 aaKnown RBP8.76□□□□□ -1.01
CLIP1-213ENST00000540338 IER3P46695 156 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 NDUFA4L2Q9NRX3 87 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 CTSZQ9UBR2 303 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 RNF24Q9Y225 148 aa8.76□□□□□ -1.01
CLIP1-213ENST00000540338 IGHV1-3A0A0C4DH29 117 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 TCRBV4S1A1TA0A5B7 111 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 CRISP2P16562 243 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 OR1P1Q8NH06 330 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 OCC1Q8TAD7 63 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 DERL1Q9BUN8 251 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 ELOVL1Q9BW60 279 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 CUL9Q8IWT3 2517 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 PGPA6NDG6 321 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 FOXH1O75593 365 aa8.75□□□□□ -1.01
CLIP1-213ENST00000540338 TOX4O94842 621 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms