RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 TRAT1Q6PIZ9 186 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 TCF23Q7RTU1 214 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 LYG1Q8N1E2 194 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 OR52E5Q8NH55 327 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 WIPF2Q8TF74 440 aaPredicted RBP5.42□□□□□ -1.54
USP28-202ENST00000535607 DDB2Q92466 427 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 ALKBH3Q96Q83 286 aaPredicted RBP5.42□□□□□ -1.54
USP28-202ENST00000535607 OR2V2Q96R30 315 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 HSD17B10Q99714 261 aaKnown RBP5.42□□□□□ -1.54
USP28-202ENST00000535607 MS4A6AQ9H2W1 248 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 CST9LQ9H4G1 147 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 FER1L5A0AVI2 2057 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 PIEZO1Q92508 2521 aa5.42□□□□□ -1.54
USP28-202ENST00000535607 DCHS1Q96JQ0 3298 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 LOC102723996A0A087X1L8 192 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 IGKV1-6A0A0C4DH72 117 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 A0A1W2PNU3 283 aaPredicted RBP5.41□□□□□ -1.54
USP28-202ENST00000535607 TMEM30CPA0ZSE6 113 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 G3V3Y1 287 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 KLF7O75840 302 aaPredicted RBP5.41□□□□□ -1.54
USP28-202ENST00000535607 HAND1O96004 215 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 CA2P00918 260 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 IGKV1-39P01597 117 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 HLA-DRB1P01911 266 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 IGKV1D-39P04432 117 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 ARL14EPLP0DKL9 152 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 SCGB1A1P11684 91 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 NTF3P20783 257 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 USF1P22415 310 aaPredicted RBP5.41□□□□□ -1.54
USP28-202ENST00000535607 NPPCP23582 126 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 GCHFRP30047 84 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 PTGDSP41222 190 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 KIR2DS2P43631 304 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 GPM6AP51674 278 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 EDDM3BP56851 147 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 CARD18P57730 90 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 SEC11AP67812 179 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 TFF3Q07654 80 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 KLF5Q13887 457 aaPredicted RBP5.41□□□□□ -1.54
USP28-202ENST00000535607 TDRG1Q3Y452 100 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 ZNF585BQ52M93 769 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 FAM71F2Q6NXP2 309 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 SLC25A34Q6PIV7 304 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 TMEM136Q6ZRR5 245 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 COLCA1Q6ZS62 124 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 ATP5L2Q7Z4Y8 100 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 VASH2Q86V25 355 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 OR8I2Q8N0Y5 310 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 DRAM1Q8N682 238 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 ZIC4Q8N9L1 334 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 OR1K1Q8NGR3 316 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 GATAD1Q8WUU5 269 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 DPF1Q92782 380 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 CHCHD1Q96BP2 118 aaKnown RBP5.41□□□□□ -1.54
USP28-202ENST00000535607 GALMQ96C23 342 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 TMEM70Q9BUB7 260 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 RTL8AQ9BWD3 113 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 PLEKHA3Q9HB20 300 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 NPVFQ9HCQ7 196 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 RAB9BQ9NP90 201 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 ENY2Q9NPA8 101 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 BEX4Q9NWD9 120 aaPredicted RBP5.41□□□□□ -1.54
USP28-202ENST00000535607 MTCH1Q9NZJ7 389 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 TP53TG3Q9ULZ0 132 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 SOX21Q9Y651 276 aaPredicted RBP5.41□□□□□ -1.54
USP28-202ENST00000535607 PTPRBP23467 1997 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 FREM2Q5SZK8 3169 aa5.41□□□□□ -1.54
USP28-202ENST00000535607 CHD3Q12873 2000 aaKnown RBP5.4□□□□□ -1.54
USP28-202ENST00000535607 LOC105371242A0A075B767 164 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 ODAMA1E959 279 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 A6NDN8 102 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 PMS2P5A8MQ11 134 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 H0YJW9 148 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 J3QT63 122 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 HSPB6O14558 160 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 RBFOX2O43251 390 aaKnown RBP eCLIP5.4□□□□□ -1.54
USP28-202ENST00000535607 LIFP15018 202 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 SRIP30626 198 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 CEACAM8P31997 349 aaPredicted RBP5.4□□□□□ -1.54
USP28-202ENST00000535607 ZNF83P51522 516 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 TMPRSS3P57727 454 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 RPL31P62899 125 aaKnown RBP5.4□□□□□ -1.54
USP28-202ENST00000535607 HIST1H1AQ02539 215 aaPredicted RBP5.4□□□□□ -1.54
USP28-202ENST00000535607 ZNF718Q3SXZ3 478 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 KRTCAP3Q53RY4 240 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 PSMG4Q5JS54 123 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 LDLRAD2Q5SZI1 272 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 UNQ5815/PRO19632Q6UWF5 114 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 ZNF497Q6ZNH5 498 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 PQLC2Q6ZP29 291 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 DEFB125Q8N687 156 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 Q8N976 141 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 OR4A16Q8NH70 328 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 TSKUQ8WUA8 353 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 CT55Q8WUE5 264 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 TMEM190Q8WZ59 177 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 BCL2L2Q92843 193 aaPredicted RBP5.4□□□□□ -1.54
USP28-202ENST00000535607 PIMREGQ9BSJ6 248 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 LINC00470Q9BZP3 86 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 PRSS22Q9GZN4 317 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms