RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 REG1AP05451 166 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 SNCAP37840 140 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 SUB1P53999 127 aaKnown RBP eCLIP9.96□□□□□ -0.82
VPS52-220ENST00000493674 ZNF266Q14584 549 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 CLINT1Q14677 625 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 OR8G2PQ6IF36 304 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 TEX261Q6UWH6 196 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 Q71RC1 249 aaPredicted RBP9.96□□□□□ -0.82
VPS52-220ENST00000493674 TMEM68Q96MH6 324 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 GINS3Q9BRX5 216 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 TMEM147Q9BVK8 224 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 JMJD1CQ15652 2540 aa9.96□□□□□ -0.82
VPS52-220ENST00000493674 LINC01548A6NM66 108 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 CLDN34H7C241 214 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 CRLF1O75462 422 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 APELAP0DMC3 54 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 TPT1P13693 172 aaKnown RBP9.95□□□□□ -0.82
VPS52-220ENST00000493674 GPX4P36969 197 aaPredicted RBP9.95□□□□□ -0.82
VPS52-220ENST00000493674 CD69Q07108 199 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 SCGB2A2Q13296 93 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 AKIRIN2Q53H80 203 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 ARSJQ5FYB0 599 aaPredicted RBP9.95□□□□□ -0.82
VPS52-220ENST00000493674 C19orf35Q6ZS72 473 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 BAP18Q8IXM2 172 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 ZNF680Q8NEM1 530 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 FAM110DQ8TAY7 271 aaPredicted RBP9.95□□□□□ -0.82
VPS52-220ENST00000493674 ABHD5Q8WTS1 349 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 PHYHIPLQ96FC7 376 aa9.95□□□□□ -0.82
VPS52-220ENST00000493674 IGLV11-55A0A075B6I3 123 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 BORCS7-ASMTA0A0B4J1R7 106 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 CORTO00230 105 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 IFNA4P05014 189 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 BLCAPP62952 87 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 EIF5AP63241 154 aaKnown RBP9.94□□□□□ -0.82
VPS52-220ENST00000493674 Q6ZS46 218 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 LILRB2Q8N423 598 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 LFNGQ8NES3 379 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 OR1L6Q8NGR2 347 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 CACNG8Q8WXS5 425 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 FANCD2OSQ96PS1 177 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 WDR61Q9GZS3 305 aaKnown RBP9.94□□□□□ -0.82
VPS52-220ENST00000493674 WNT10AQ9GZT5 417 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 FNDC4Q9H6D8 234 aaPredicted RBP9.94□□□□□ -0.82
VPS52-220ENST00000493674 PARP11Q9NR21 331 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 UQCC1Q9NVA1 299 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 PAIP2BQ9ULR5 123 aaKnown RBP9.94□□□□□ -0.82
VPS52-220ENST00000493674 WDR83OSQ9Y284 106 aa9.94□□□□□ -0.82
VPS52-220ENST00000493674 LSM4Q9Y4Z0 139 aaKnown RBP9.94□□□□□ -0.82
VPS52-220ENST00000493674 UBE2L5PA0A1B0GUS4 154 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 DNAJC9-AS1A6NH13 148 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 I3L2K1 104 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 BRI3O95415 125 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 CFHR3Q02985 330 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 EXOSC2Q13868 293 aaKnown RBP9.93□□□□□ -0.82
VPS52-220ENST00000493674 ZNF767PQ75MW2 155 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 SLC16A13Q7RTY0 426 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 SLC35E3Q7Z769 313 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 CENPVQ7Z7K6 275 aaPredicted RBP9.93□□□□□ -0.82
VPS52-220ENST00000493674 Q8N2B8 174 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 ESM1Q9NQ30 184 aa9.93□□□□□ -0.82
VPS52-220ENST00000493674 CUBNO60494 3623 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 SOX15O60248 233 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 TSPAN9O75954 239 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 FAM157CP0CG43 387 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 SPP1P10451 314 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 SRD5A1P18405 259 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 ATP6V0CP27449 155 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 KRTAP21-3Q3LHN1 58 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 UNQ5815/PRO19632Q6UWF5 114 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 TREML4Q6UXN2 200 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 SCARB1Q8WTV0 552 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 TAF15Q92804 592 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS52-220ENST00000493674 PSMG3Q9BT73 122 aaPredicted RBP9.92□□□□□ -0.82
VPS52-220ENST00000493674 ZNF702PQ9H963 129 aa9.92□□□□□ -0.82
VPS52-220ENST00000493674 TRBV9A0A0B4J1U6 114 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 TRAV41A0A0B4J266 112 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 G3V318 75 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 K7EIM0 57 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 AP4M1O00189 453 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 MPDU1O75352 247 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 IFNA7P01567 189 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 IFNA5P01569 189 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 SEC11BP0C7V7 166 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 PPIFP30405 207 aaKnown RBP9.91□□□□□ -0.82
VPS52-220ENST00000493674 GAMTQ14353 236 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 ECSCRQ19T08 205 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 TMEM144Q7Z5S9 345 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 THAP8Q8NA92 274 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 NPFFR1Q9GZQ6 430 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 SH3BGRL3Q9H299 93 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 NPVFQ9HCQ7 196 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 PLA2G2EQ9NZK7 142 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 MRPL36Q9P0J6 103 aaKnown RBP9.91□□□□□ -0.82
VPS52-220ENST00000493674 TIMM9Q9Y5J7 89 aa9.91□□□□□ -0.82
VPS52-220ENST00000493674 IGKV1OR2-108A0A075B7D4 117 aa9.9□□□□□ -0.82
VPS52-220ENST00000493674 HIST1H1BP16401 226 aaKnown RBP9.9□□□□□ -0.82
VPS52-220ENST00000493674 OPRK1P41145 380 aa9.9□□□□□ -0.82
VPS52-220ENST00000493674 HILS1P60008 231 aa9.9□□□□□ -0.82
VPS52-220ENST00000493674 RPL15P61313 204 aaKnown RBP9.9□□□□□ -0.82
VPS52-220ENST00000493674 RUNX1Q01196 453 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms