RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	GPX8	Q8TED1	209 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	MRGPRF	Q96AM1	343 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	PINX1	Q96BK5	328 aa	Known RBP	13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	RARRES2	Q99969	163 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	C11orf68	Q9H3H3	251 aa	Known RBP	13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	HERC2	O95714	4834 aa		13.52	□□□□□ -0.24
HDAC6-231	ENST00000488905	AGRN	O00468	2067 aa		13.52	□□□□□ -0.24
HDAC6-231	ENST00000488905	EIF4E	P06730	217 aa	Known RBP	13.52	□□□□□ -0.25
HDAC6-231	ENST00000488905	LSM3	P62310	102 aa	Known RBP	13.52	□□□□□ -0.25
HDAC6-231	ENST00000488905	GBGT1	Q8N5D6	347 aa		13.52	□□□□□ -0.25
HDAC6-231	ENST00000488905	GINS3	Q9BRX5	216 aa		13.52	□□□□□ -0.25
HDAC6-231	ENST00000488905	DEDD	O75618	318 aa		13.51	□□□□□ -0.25
HDAC6-231	ENST00000488905	HSPE1	P61604	102 aa	Known RBP	13.51	□□□□□ -0.25
HDAC6-231	ENST00000488905	LGALS9C	Q6DKI2	356 aa		13.51	□□□□□ -0.25
HDAC6-231	ENST00000488905	TCF24	Q7RTU0	167 aa		13.51	□□□□□ -0.25
HDAC6-231	ENST00000488905	YIPF6	Q96EC8	236 aa		13.51	□□□□□ -0.25
HDAC6-231	ENST00000488905	SCPEP1	Q9HB40	452 aa		13.51	□□□□□ -0.25
HDAC6-231	ENST00000488905	CA1	P00915	261 aa	Predicted RBP	13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	CD5	P06127	495 aa		13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	RCVRN	P35243	200 aa		13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	UCP3	P55916	312 aa		13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	NANOS2	P60321	138 aa	Known RBP	13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	PAFAH1B2	P68402	229 aa		13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	ERH	P84090	104 aa	Known RBP	13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	TOMM20L	Q6UXN7	152 aa		13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	OR11H2	Q8NH07	326 aa		13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	ST8SIA2	Q92186	375 aa		13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	MFF	Q9GZY8	342 aa		13.5	□□□□□ -0.25
HDAC6-231	ENST00000488905	ST8SIA3	O43173	380 aa		13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	RBMS2	Q15434	407 aa	Known RBP	13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	SPINK9	Q5DT21	86 aa		13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	SNX29P2	Q8IUI4	249 aa		13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	C11orf45	Q8TAV5	145 aa		13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	MS4A6A	Q9H2W1	248 aa		13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	VSIR	Q9H7M9	311 aa		13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	ZFAND3	Q9H8U3	227 aa		13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	FBXL17	Q9UF56	701 aa		13.49	□□□□□ -0.25
HDAC6-231	ENST00000488905	APOA1	P02647	267 aa		13.48	□□□□□ -0.25
HDAC6-231	ENST00000488905	APOH	P02749	345 aa	Predicted RBP	13.48	□□□□□ -0.25
HDAC6-231	ENST00000488905	NPBWR1	P48145	328 aa		13.48	□□□□□ -0.25
HDAC6-231	ENST00000488905	IZUMO4	Q1ZYL8	232 aa		13.48	□□□□□ -0.25
HDAC6-231	ENST00000488905	VCX3A	Q9NNX9	186 aa		13.48	□□□□□ -0.25
HDAC6-231	ENST00000488905	COMMD3	Q9UBI1	195 aa		13.48	□□□□□ -0.25
HDAC6-231	ENST00000488905	PUS1	Q9Y606	427 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
HDAC6-231	ENST00000488905	TRAV2	A0A0B4J234	112 aa		13.47	□□□□□ -0.25
HDAC6-231	ENST00000488905	SMIM31	A0A1B0GVY4	71 aa		13.47	□□□□□ -0.25
HDAC6-231	ENST00000488905	DFFB	O76075	338 aa		13.47	□□□□□ -0.25
HDAC6-231	ENST00000488905	LEMD1	Q68G75	181 aa		13.47	□□□□□ -0.25
HDAC6-231	ENST00000488905	ZNF600	Q6ZNG1	722 aa		13.47	□□□□□ -0.25
HDAC6-231	ENST00000488905	LILRB2	Q8N423	598 aa		13.47	□□□□□ -0.25
HDAC6-231	ENST00000488905	SLC35G3	Q8N808	338 aa		13.47	□□□□□ -0.25
HDAC6-231	ENST00000488905	DUSP18	Q8NEJ0	188 aa		13.47	□□□□□ -0.25
HDAC6-231	ENST00000488905	IGHV3-66	A0A0C4DH42	116 aa		13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905		M0QYG6	137 aa		13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905	DNASE2	O00115	360 aa	Predicted RBP	13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905	IGKV1-5	P01602	117 aa		13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905	IFNA4	P05014	189 aa		13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905	DEFB131A	P59861	70 aa		13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905	RND3	P61587	244 aa		13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905	TMEM187	Q14656	261 aa		13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905	FAM24B	Q8N5W8	94 aa		13.46	□□□□□ -0.25
HDAC6-231	ENST00000488905		A0A087WXM4	84 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905		A0A1B0GU03	582 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	INS-IGF2	F8WCM5	200 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	DEFB4A	O15263	64 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905		P0C879	139 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	SNCA	P37840	140 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	AKR1C2	P52895	323 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	NCS1	P62166	190 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	RPL11	P62913	178 aa	Known RBP	13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	ZNF486	Q96H40	463 aa	Predicted RBP	13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	TMEM231	Q9H6L2	316 aa		13.45	□□□□□ -0.26
HDAC6-231	ENST00000488905	CORT	O00230	105 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905	PGAM2	P15259	253 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905	ELK1	P19419	428 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905	PI3	P19957	117 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905	PIGP	P57054	158 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905	PVRIG	Q6DKI7	326 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905	STH	Q8IWL8	128 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905	TP53RK	Q96S44	253 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905	RABAC1	Q9UI14	185 aa		13.44	□□□□□ -0.26
HDAC6-231	ENST00000488905		A0A0B4J293	547 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	HPGDS	O60760	199 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	TMEM50A	O95807	157 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	IFNA17	P01571	189 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	RNASE2	P10153	161 aa	Known RBP	13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	HOXA1	P49639	335 aa	Predicted RBP	13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	LHFPL1	Q86WI0	220 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905		Q8NAQ8	132 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	C2CD4C	Q8TF44	421 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	PDCD10	Q9BUL8	212 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	FAT2	Q9NYQ8	4349 aa		13.43	□□□□□ -0.26
HDAC6-231	ENST00000488905	ATG12	O94817	140 aa		13.42	□□□□□ -0.26
HDAC6-231	ENST00000488905	SUB1	P53999	127 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
HDAC6-231	ENST00000488905	TCTA	P57738	103 aa		13.42	□□□□□ -0.26
HDAC6-231	ENST00000488905	VBP1	P61758	197 aa		13.42	□□□□□ -0.26
HDAC6-231	ENST00000488905	RNASE12	Q5GAN4	147 aa	Known RBP	13.42	□□□□□ -0.26
HDAC6-231	ENST00000488905	RNASE10	Q5GAN6	216 aa	Known RBP	13.42	□□□□□ -0.26
HDAC6-231	ENST00000488905	ARRDC1	Q8N5I2	433 aa		13.42	□□□□□ -0.26
HDAC6-231	ENST00000488905	FUNDC2	Q9BWH2	189 aa		13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms