RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 PHLDA2Q53GA4 152 aa9.97□□□□□ -0.81
CHD3-209ENST00000473376 DUSP18Q8NEJ0 188 aa9.97□□□□□ -0.81
CHD3-209ENST00000473376 HYDINQ4G0P3 5121 aa9.96□□□□□ -0.81
CHD3-209ENST00000473376 YIF1AO95070 293 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 TNFAIP8O95379 198 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 IGKV1-39P01597 117 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 IGKV1D-39P04432 117 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 EIF4EP06730 217 aaKnown RBP9.96□□□□□ -0.82
CHD3-209ENST00000473376 SUB1P53999 127 aaKnown RBP eCLIP9.96□□□□□ -0.82
CHD3-209ENST00000473376 EWSR1Q01844 656 aaKnown RBP eCLIP9.96□□□□□ -0.82
CHD3-209ENST00000473376 PMS2P11Q13670 270 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 ZNF600Q6ZNG1 722 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 ARRDC1Q8N5I2 433 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 C15orf40Q8WUR7 153 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 PHLDA1Q8WV24 401 aaPredicted RBP9.96□□□□□ -0.82
CHD3-209ENST00000473376 MISP3Q96FF7 219 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 RARRES2Q99969 163 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 TMEM231Q9H6L2 316 aa9.96□□□□□ -0.82
CHD3-209ENST00000473376 IGHV3-21A0A0B4J1V1 117 aa9.95□□□□□ -0.82
CHD3-209ENST00000473376 SCGB2A1O75556 95 aa9.95□□□□□ -0.82
CHD3-209ENST00000473376 P0C879 139 aa9.95□□□□□ -0.82
CHD3-209ENST00000473376 RPL35AP18077 110 aaKnown RBP9.95□□□□□ -0.82
CHD3-209ENST00000473376 SNCAP37840 140 aa9.95□□□□□ -0.82
CHD3-209ENST00000473376 RPL5P46777 297 aaKnown RBP9.95□□□□□ -0.82
CHD3-209ENST00000473376 LHFPL1Q86WI0 220 aa9.95□□□□□ -0.82
CHD3-209ENST00000473376 A0A1W2PS18 150 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 ZNF207O43670 478 aaKnown RBP9.94□□□□□ -0.82
CHD3-209ENST00000473376 TGFBR1P36897 503 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 AARDQ4LEZ3 155 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 TOMM20LQ6UXN7 152 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 APRG1Q8IVJ8 170 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 MRGPRFQ96AM1 343 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 HRH4Q9H3N8 390 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 COMMD3Q9UBI1 195 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 CACFD1Q9UGQ2 172 aa9.94□□□□□ -0.82
CHD3-209ENST00000473376 PLECQ15149 4684 aaKnown RBP9.94□□□□□ -0.82
CHD3-209ENST00000473376 ALMS1Q8TCU4 4167 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 IGHV3OR16-8A0A075B7F1 116 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 TRAV30A0A087WSZ9 112 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 TMEM50AO95807 157 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 IFNA4P05014 189 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 RORCP51449 518 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 MZT2AQ6P582 158 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 TCF24Q7RTU0 167 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 FAM219AQ8IW50 185 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 C11orf45Q8TAV5 145 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 ZFAND1Q8TCF1 268 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 AP3S1Q92572 193 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 GRAMD2BQ96HH9 432 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 ZFAND3Q9H8U3 227 aa9.93□□□□□ -0.82
CHD3-209ENST00000473376 A0A0B4J293 547 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 C11orf94C9JXX5 98 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 ELK1P19419 428 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 NPPCP23582 126 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 PIGPP57054 158 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 LSM3P62310 102 aaKnown RBP9.92□□□□□ -0.82
CHD3-209ENST00000473376 SSBP1Q04837 148 aaKnown RBP9.92□□□□□ -0.82
CHD3-209ENST00000473376 TMEM187Q14656 261 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 BSXQ3C1V8 233 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 RNASE10Q5GAN6 216 aaKnown RBP9.92□□□□□ -0.82
CHD3-209ENST00000473376 MORN3Q6PF18 240 aaPredicted RBP9.92□□□□□ -0.82
CHD3-209ENST00000473376 OR11H2Q8NH07 326 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 OR4X1Q8NH49 305 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 OR52E5Q8NH55 327 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 PINX1Q96BK5 328 aaKnown RBP9.92□□□□□ -0.82
CHD3-209ENST00000473376 PDCD10Q9BUL8 212 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 FUNDC2Q9BWH2 189 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 MS4A6AQ9H2W1 248 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 MTFP1Q9UDX5 166 aa9.92□□□□□ -0.82
CHD3-209ENST00000473376 PUS1Q9Y606 427 aaKnown RBP eCLIP9.92□□□□□ -0.82
CHD3-209ENST00000473376 C3orf85A0A1B0GTC6 90 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 DNASE2O00115 360 aaPredicted RBP9.91□□□□□ -0.82
CHD3-209ENST00000473376 ST8SIA3O43173 380 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 CLN5O75503 358 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 IGKV1-5P01602 117 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 SPP1P10451 314 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 UCP1P25874 307 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 CRYBB3P26998 211 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 RBMS2Q15434 407 aaKnown RBP9.91□□□□□ -0.82
CHD3-209ENST00000473376 SNX29P2Q8IUI4 249 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 SLC35G3Q8N808 338 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 CCDC71LQ8N9Z2 235 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 TERB2Q8NHR7 220 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 ST8SIA2Q92186 375 aa9.91□□□□□ -0.82
CHD3-209ENST00000473376 SEPSECSQ9HD40 501 aaKnown RBP9.91□□□□□ -0.82
CHD3-209ENST00000473376 IFNA17P01571 189 aa9.9□□□□□ -0.82
CHD3-209ENST00000473376 CD74P04233 296 aa9.9□□□□□ -0.82
CHD3-209ENST00000473376 RNASE2P10153 161 aaKnown RBP9.9□□□□□ -0.82
CHD3-209ENST00000473376 TFPI2P48307 235 aa9.9□□□□□ -0.82
CHD3-209ENST00000473376 EIF2B2P49770 351 aaKnown RBP9.9□□□□□ -0.82
CHD3-209ENST00000473376 AKR1C2P52895 323 aa9.9□□□□□ -0.82
CHD3-209ENST00000473376 NCS1P62166 190 aa9.9□□□□□ -0.82
CHD3-209ENST00000473376 RRNAD1Q96FB5 475 aaKnown RBP9.9□□□□□ -0.82
CHD3-209ENST00000473376 NARS2Q96I59 477 aaKnown RBP9.9□□□□□ -0.82
CHD3-209ENST00000473376 METTL26Q96S19 204 aa9.9□□□□□ -0.82
CHD3-209ENST00000473376 TP53RKQ96S44 253 aa9.9□□□□□ -0.82
CHD3-209ENST00000473376 ABHD1Q96SE0 405 aa9.9□□□□□ -0.82
CHD3-209ENST00000473376 IGHV3-49A0A0A0MS15 119 aa9.89□□□□□ -0.83
CHD3-209ENST00000473376 A0A1B0GU03 582 aa9.89□□□□□ -0.83
CHD3-209ENST00000473376 RPS10-NUDT3A0A1W2PQS6 291 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms