RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 ZNF114Q8NC26 417 aa15.51■□□□□ 0.07
COL9A3-207ENST00000467819 CSTL1Q9H114 145 aa15.51■□□□□ 0.07
COL9A3-207ENST00000467819 MPTX1A8MV57 137 aa15.5■□□□□ 0.07
COL9A3-207ENST00000467819 RCVRNP35243 200 aa15.5■□□□□ 0.07
COL9A3-207ENST00000467819 HSPE1P61604 102 aaKnown RBP15.5■□□□□ 0.07
COL9A3-207ENST00000467819 IZUMO4Q1ZYL8 232 aa15.5■□□□□ 0.07
COL9A3-207ENST00000467819 PHLDA1Q8WV24 401 aaPredicted RBP15.5■□□□□ 0.07
COL9A3-207ENST00000467819 SCPEP1Q9HB40 452 aa15.5■□□□□ 0.07
COL9A3-207ENST00000467819 A0A087WXM4 84 aa15.49■□□□□ 0.07
COL9A3-207ENST00000467819 M0QYG6 137 aa15.49■□□□□ 0.07
COL9A3-207ENST00000467819 APOA1P02647 267 aa15.49■□□□□ 0.07
COL9A3-207ENST00000467819 UCP3P55916 312 aa15.49■□□□□ 0.07
COL9A3-207ENST00000467819 CMC4P56277 68 aaPredicted RBP15.49■□□□□ 0.07
COL9A3-207ENST00000467819 NCS1P62166 190 aa15.49■□□□□ 0.07
COL9A3-207ENST00000467819 ERHP84090 104 aaKnown RBP15.49■□□□□ 0.07
COL9A3-207ENST00000467819 RNASE12Q5GAN4 147 aaKnown RBP15.49■□□□□ 0.07
COL9A3-207ENST00000467819 FAM90A2PQ658T7 463 aa15.49■□□□□ 0.07
COL9A3-207ENST00000467819 TCF24Q7RTU0 167 aa15.49■□□□□ 0.07
COL9A3-207ENST00000467819 ST8SIA2Q92186 375 aa15.48■□□□□ 0.07
COL9A3-207ENST00000467819 RARRES2Q99969 163 aa15.48■□□□□ 0.07
COL9A3-207ENST00000467819 GINS3Q9BRX5 216 aa15.48■□□□□ 0.07
COL9A3-207ENST00000467819 ST8SIA3O43173 380 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 HPGDSO60760 199 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 PGAM2P15259 253 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 ELK1P19419 428 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 PI3P19957 117 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 VBP1P61758 197 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 PAFAH1B2P68402 229 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 TOMM20LQ6UXN7 152 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 GATAD1Q8WUU5 269 aa15.47■□□□□ 0.07
COL9A3-207ENST00000467819 IGHV3-66A0A0C4DH42 116 aa15.46■□□□□ 0.07
COL9A3-207ENST00000467819 APOHP02749 345 aaPredicted RBP15.46■□□□□ 0.07
COL9A3-207ENST00000467819 NPBWR1P48145 328 aa15.46■□□□□ 0.07
COL9A3-207ENST00000467819 RPP25LQ8N5L8 163 aaKnown RBP15.46■□□□□ 0.07
COL9A3-207ENST00000467819 SLC35G3Q8N808 338 aa15.46■□□□□ 0.07
COL9A3-207ENST00000467819 DUSP18Q8NEJ0 188 aa15.46■□□□□ 0.07
COL9A3-207ENST00000467819 OR11H2Q8NH07 326 aa15.46■□□□□ 0.07
COL9A3-207ENST00000467819 PUS1Q9Y606 427 aaKnown RBP eCLIP15.46■□□□□ 0.07
COL9A3-207ENST00000467819 AGRNO00468 2067 aa15.46■□□□□ 0.07
COL9A3-207ENST00000467819 DNASE2O00115 360 aaPredicted RBP15.45■□□□□ 0.06
COL9A3-207ENST00000467819 IGKV1-5P01602 117 aa15.45■□□□□ 0.06
COL9A3-207ENST00000467819 SNCAP37840 140 aa15.45■□□□□ 0.06
COL9A3-207ENST00000467819 AKR1C2P52895 323 aa15.45■□□□□ 0.06
COL9A3-207ENST00000467819 NANOS2P60321 138 aaKnown RBP15.45■□□□□ 0.06
COL9A3-207ENST00000467819 LILRB2Q8N423 598 aa15.45■□□□□ 0.06
COL9A3-207ENST00000467819 FUNDC2Q9BWH2 189 aa15.45■□□□□ 0.06
COL9A3-207ENST00000467819 FBXL17Q9UF56 701 aa15.45■□□□□ 0.06
COL9A3-207ENST00000467819 DNAH10Q8IVF4 4471 aa15.45■□□□□ 0.06
COL9A3-207ENST00000467819 DEDDO75618 318 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 DFFBO76075 338 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 TNFAIP8O95379 198 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 CA1P00915 261 aaPredicted RBP15.44■□□□□ 0.06
COL9A3-207ENST00000467819 IFNA17P01571 189 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 PIGPP57054 158 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 RND3P61587 244 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 RPL11P62913 178 aaKnown RBP15.44■□□□□ 0.06
COL9A3-207ENST00000467819 LEMD1Q68G75 181 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 ZNF600Q6ZNG1 722 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 TP53RKQ96S44 253 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 MS4A6AQ9H2W1 248 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 VSIRQ9H7M9 311 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 ZFAND3Q9H8U3 227 aa15.44■□□□□ 0.06
COL9A3-207ENST00000467819 FAM25AB3EWG3 89 aa15.43■□□□□ 0.06
COL9A3-207ENST00000467819 FAM25CB3EWG5 89 aa15.43■□□□□ 0.06
COL9A3-207ENST00000467819 FAM25GB3EWG6 89 aa15.43■□□□□ 0.06
COL9A3-207ENST00000467819 CD5P06127 495 aa15.43■□□□□ 0.06
COL9A3-207ENST00000467819 DEFB131AP59861 70 aa15.43■□□□□ 0.06
COL9A3-207ENST00000467819 RNASE10Q5GAN6 216 aaKnown RBP15.43■□□□□ 0.06
COL9A3-207ENST00000467819 C11orf45Q8TAV5 145 aa15.43■□□□□ 0.06
COL9A3-207ENST00000467819 A0A0B4J293 547 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 A0A1B0GU03 582 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 DEFB4AO15263 64 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 TMEM50AO95807 157 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 P0C879 139 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 HOXA1P49639 335 aaPredicted RBP15.42■□□□□ 0.06
COL9A3-207ENST00000467819 PPP5CP53041 499 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 RBMS2Q15434 407 aaKnown RBP15.42■□□□□ 0.06
COL9A3-207ENST00000467819 LHFPL1Q86WI0 220 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 FAM24BQ8N5W8 94 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 ZNF486Q96H40 463 aaPredicted RBP15.42■□□□□ 0.06
COL9A3-207ENST00000467819 PDCD10Q9BUL8 212 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 C11orf68Q9H3H3 251 aaKnown RBP15.42■□□□□ 0.06
COL9A3-207ENST00000467819 KLK11Q9UBX7 282 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 RABAC1Q9UI14 185 aa15.42■□□□□ 0.06
COL9A3-207ENST00000467819 CD3DP04234 171 aa15.41■□□□□ 0.06
COL9A3-207ENST00000467819 RNASE2P10153 161 aaKnown RBP15.41■□□□□ 0.06
COL9A3-207ENST00000467819 TMEM187Q14656 261 aa15.41■□□□□ 0.06
COL9A3-207ENST00000467819 TRIM16LQ309B1 348 aa15.41■□□□□ 0.06
COL9A3-207ENST00000467819 MFFQ9GZY8 342 aa15.41■□□□□ 0.06
COL9A3-207ENST00000467819 TMEM231Q9H6L2 316 aa15.41■□□□□ 0.06
COL9A3-207ENST00000467819 C3orf85A0A1B0GTC6 90 aa15.4■□□□□ 0.06
COL9A3-207ENST00000467819 ETV6P41212 452 aa15.4■□□□□ 0.06
COL9A3-207ENST00000467819 RORCP51449 518 aa15.4■□□□□ 0.06
COL9A3-207ENST00000467819 SUB1P53999 127 aaKnown RBP eCLIP15.4■□□□□ 0.06
COL9A3-207ENST00000467819 SP6Q3SY56 376 aa15.4■□□□□ 0.06
COL9A3-207ENST00000467819 LGALS9CQ6DKI2 356 aa15.4■□□□□ 0.06
COL9A3-207ENST00000467819 MZT2AQ6P582 158 aa15.4■□□□□ 0.06
COL9A3-207ENST00000467819 OR52I2Q8NH67 350 aa15.4■□□□□ 0.06
COL9A3-207ENST00000467819 MRPL36Q9P0J6 103 aaKnown RBP15.4■□□□□ 0.06
COL9A3-207ENST00000467819 VPS13DQ5THJ4 4388 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms