RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 GPR146Q96CH1 333 aa8.75□□□□□ -1.01
COL28A1-203ENST00000435823 MISP3Q96FF7 219 aa8.75□□□□□ -1.01
COL28A1-203ENST00000435823 ATP6V0BQ99437 205 aa8.75□□□□□ -1.01
COL28A1-203ENST00000435823 SDHCQ99643 169 aaPredicted RBP8.75□□□□□ -1.01
COL28A1-203ENST00000435823 C21orf62Q9NYP8 219 aa8.75□□□□□ -1.01
COL28A1-203ENST00000435823 PRR13Q9NZ81 148 aa8.75□□□□□ -1.01
COL28A1-203ENST00000435823 CACNG5Q9UF02 275 aa8.75□□□□□ -1.01
COL28A1-203ENST00000435823 SHPKQ9UHJ6 478 aa8.75□□□□□ -1.01
COL28A1-203ENST00000435823 IGHV3-21A0A0B4J1V1 117 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 DUXBA0A1W2PPF3 345 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 HLA-AP01891 365 aaKnown RBP8.74□□□□□ -1.01
COL28A1-203ENST00000435823 SULT1A3P0DMM9 295 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 SULT1A4P0DMN0 295 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 CCR6P51684 374 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 Q56UQ5 140 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 Q6ZRM9 215 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 GPHB5Q86YW7 130 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 SCARB1Q8WTV0 552 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 S100ZQ8WXG8 99 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 BSCL2Q96G97 398 aaPredicted RBP8.74□□□□□ -1.01
COL28A1-203ENST00000435823 PRR25Q96S07 402 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 BATF3Q9NR55 127 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 GAR1Q9NY12 217 aaKnown RBP8.74□□□□□ -1.01
COL28A1-203ENST00000435823 SIGLEC8Q9NYZ4 499 aa8.74□□□□□ -1.01
COL28A1-203ENST00000435823 DNAH3Q8TD57 4116 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 ZNF320A2RRD8 509 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 OR2T8A6NH00 312 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 CEBPZOSA8MTT3 80 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 K7EIM0 57 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 LGALS9O00182 355 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 CORTO00230 105 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 TGOLN2O43493 480 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 NDUFB6O95139 128 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 SFT2D2O95562 160 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 IGLV1-51P01701 117 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 CSN3P07498 182 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 UBE2MP61081 183 aaKnown RBP8.73□□□□□ -1.01
COL28A1-203ENST00000435823 AARDQ4LEZ3 155 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 SPSB3Q6PJ21 355 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 IL34Q6ZMJ4 242 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 LYZL2Q7Z4W2 148 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 HAPLN4Q86UW8 402 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 UBAC2Q8NBM4 344 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 DYNLRB2Q8TF09 96 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 PINX1Q96BK5 328 aaKnown RBP8.73□□□□□ -1.01
COL28A1-203ENST00000435823 CCDC32Q9BV29 185 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 PALMDQ9NP74 551 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 ZC4H2Q9NQZ6 224 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 PTTG2Q9NZH5 202 aa8.73□□□□□ -1.01
COL28A1-203ENST00000435823 I3L2K1 104 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 MT-CO2P00403 227 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 GP9P14770 177 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 SPNP16150 400 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 MFAP4P55083 255 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 PPP1R1AQ13522 171 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 SMCO1Q147U7 214 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 NMSQ5H8A3 153 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 TXN2Q99757 166 aa8.72□□□□□ -1.01
COL28A1-203ENST00000435823 HEYLQ9NQ87 328 aaPredicted RBP8.72□□□□□ -1.01
COL28A1-203ENST00000435823 A0A1B0GU03 582 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 C2orf70A6NJV1 201 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 NUPL2O15504 423 aaKnown RBP8.71□□□□□ -1.02
COL28A1-203ENST00000435823 LYRM1O43325 122 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 NXPH3O95157 252 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 RNASE2P10153 161 aaKnown RBP8.71□□□□□ -1.02
COL28A1-203ENST00000435823 BTCP35070 178 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 HTR2BP41595 481 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 ANKRD55Q3KP44 614 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 LCN12Q6JVE5 192 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 LRTM2Q8N967 370 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 DUSP18Q8NEJ0 188 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 OR2K2Q8NGT1 345 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 OR1S1Q8NH92 325 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 WDR12Q9GZL7 423 aaKnown RBP8.71□□□□□ -1.02
COL28A1-203ENST00000435823 HIPK2Q9H2X6 1198 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 UFC1Q9Y3C8 167 aa8.71□□□□□ -1.02
COL28A1-203ENST00000435823 IGHV3-35A0A0C4DH35 117 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 A8MWP6 167 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 NDUFA4O00483 81 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 PLA2G10O15496 165 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 GNG7O60262 68 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 SCGB2A1O75556 95 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 FOLR2P14207 255 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 FCGR2BP31994 310 aaPredicted RBP8.7□□□□□ -1.02
COL28A1-203ENST00000435823 OPRK1P41145 380 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 NPBWR1P48145 328 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 ELLP55199 621 aaPredicted RBP8.7□□□□□ -1.02
COL28A1-203ENST00000435823 RELQ04864 619 aaPredicted RBP8.7□□□□□ -1.02
COL28A1-203ENST00000435823 NOXA1Q86UR1 476 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 SLC24A4Q8NFF2 622 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 COQ8AQ8NI60 647 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 MARC2Q969Z3 335 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 ZNF436Q9C0F3 470 aaPredicted RBP8.7□□□□□ -1.02
COL28A1-203ENST00000435823 TECRQ9NZ01 308 aaKnown RBP8.7□□□□□ -1.02
COL28A1-203ENST00000435823 FLVCR2Q9UPI3 526 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 TMED3Q9Y3Q3 217 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 SORL1Q92673 2214 aa8.7□□□□□ -1.02
COL28A1-203ENST00000435823 RPS10-NUDT3A0A1W2PQS6 291 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 TMEM213A2RRL7 107 aa8.69□□□□□ -1.02
COL28A1-203ENST00000435823 C9orf170A2RU37 121 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms