RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 DPRXA6NFQ7 191 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 SMIM9A6NGZ8 99 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 IBA57-AS1B1ANH7 110 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 TMEM114B3SHH9 223 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 CNIH1O95406 144 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 CRYZL1O95825 349 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 S100A6P06703 90 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 NFYAP23511 347 aaPredicted RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 AKR1C3P42330 323 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 RUNX1Q01196 453 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 KRTAP20-1Q3LI63 56 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 RPL22L1Q6P5R6 122 aaKnown RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 C9orf163Q8N9P6 203 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 OR8B3Q8NGG8 313 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 MBD3L1Q8WWY6 194 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 TSPAN32Q96QS1 320 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 NIPSNAP1Q9BPW8 284 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 BAIAP2Q9UQB8 552 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 TMEM56-RWDD3S4R434 201 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 HECTD1Q9ULT8 2610 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 RTTNQ86VV8 2226 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 ANKHD1Q8IWZ3 2542 aaKnown RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 SDK1Q7Z5N4 2213 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 A0A087WUJ7 227 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 MEIKINA0A087WXM9 373 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 TRAV26-2A0A0B4J265 109 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 IGKV2-29A2NJV5 120 aaPredicted RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 PMP2P02689 132 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 TTRP02766 147 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 ZNF80P51504 273 aaPredicted RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 FXYD2P54710 66 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 SRSF6Q13247 344 aaKnown RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 ELOBQ15370 118 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 NNATQ16517 81 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 NDUFA5Q16718 116 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 Q1T7F1 81 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 CLVS1Q8IUQ0 354 aaPredicted RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 RASSF5Q8WWW0 418 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 DNAJC9Q8WXX5 260 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 H1FXQ92522 213 aaKnown RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 SCGB3A1Q96QR1 104 aa0.71□□□□□ -2.3
VPS13A-206ENST00000376646 NAA38Q9BRA0 125 aaKnown RBP0.71□□□□□ -2.3
VPS13A-206ENST00000376646 SMARCA4P51532 1647 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 PRRC2BQ5JSZ5 2229 aaKnown RBP0.7□□□□□ -2.3
VPS13A-206ENST00000376646 FREM1Q5H8C1 2179 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 PIEZO1Q92508 2521 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 NUP155O75694 1391 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 CCDC168Q8NDH2 2452 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 TTC21AQ8NDW8 1320 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 TRAV9-1A0A075B6T8 112 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 SDCBPO00560 298 aaPredicted RBP0.7□□□□□ -2.3
VPS13A-206ENST00000376646 CLPSP04118 112 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 UBBP0CG47 229 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 CDK10Q15131 360 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 SPANXN3Q5MJ09 141 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 DHFR2Q86XF0 187 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 ZNF439Q8NDP4 499 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 OR13C4Q8NGS5 318 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 C11orf40Q8WZ69 217 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 TMEM106AQ96A25 262 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 GINS4Q9BRT9 223 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 DCSTAMPQ9H295 470 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 GLTPQ9NZD2 209 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 PRELID3BQ9Y3B1 194 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 BRWD1Q9NSI6 2320 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 BAZ2BQ9UIF8 2168 aaKnown RBP0.7□□□□□ -2.3
VPS13A-206ENST00000376646 ROBO3Q96MS0 1386 aa0.7□□□□□ -2.3
VPS13A-206ENST00000376646 PIRO00625 290 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 SHBGP04278 402 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 RPSAP08865 295 aaKnown RBP0.69□□□□□ -2.3
VPS13A-206ENST00000376646 METTL15P1P0C7V9 234 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 STX5Q13190 355 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 ZNF345Q14585 488 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 LCN15Q6UWW0 184 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 AAED1Q7RTV5 226 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 WFDC11Q8NEX6 87 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 TERB2Q8NHR7 220 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 ITFG2Q969R8 447 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 TOMM6Q96B49 74 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 CMSS1Q9BQ75 279 aaKnown RBP0.69□□□□□ -2.3
VPS13A-206ENST00000376646 C14orf105Q9NVL8 296 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 SLC22A13Q9Y226 551 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 LHFPL6Q9Y693 200 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 CHD6Q8TD26 2715 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 TOPBP1Q92547 1522 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 CCDC144AA2RUR9 1427 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 PIK3C2GO75747 1445 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 SETD5Q9C0A6 1442 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 TONSLQ96HA7 1378 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 PCDH15Q96QU1 1955 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 BICRAQ9NZM4 1560 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 hADV38S2A0JD32 116 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 TRAPPC13A5PLN9 417 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 TMEM212A6NML5 194 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 BUB1B-PAK6H3BSN5 160 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 CRYGAP11844 174 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 AP3S2P59780 193 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 CDC42P60953 191 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 EDDM3AQ14507 147 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 Q6ZSA8 131 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms