RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ZNF114Q8NC26 417 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 OR10C1Q96KK4 312 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 TXN2Q99757 166 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 NXF2Q9GZY0 626 aaKnown RBP9.42□□□□□ -0.9
CD44-203ENST00000278386 SCPEP1Q9HB40 452 aa9.42□□□□□ -0.9
CD44-203ENST00000278386 TRAV14DV4A0A0A6YYC5 116 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 MPTX1A8MV57 137 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 M0QYG6 137 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 APOA1P02647 267 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 ATF4P18848 351 aaPredicted RBP9.41□□□□□ -0.9
CD44-203ENST00000278386 AKR1C2P52895 323 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 NCS1P62166 190 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 PAFAH1B2P68402 229 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 TCF24Q7RTU0 167 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 PHLDA1Q8WV24 401 aaPredicted RBP9.41□□□□□ -0.9
CD44-203ENST00000278386 CSTL1Q9H114 145 aa9.41□□□□□ -0.9
CD44-203ENST00000278386 FAM25AB3EWG3 89 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 FAM25CB3EWG5 89 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 FAM25GB3EWG6 89 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 ST8SIA3O43173 380 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 HPGDSO60760 199 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 TNFAIP8O95379 198 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 HOXA1P49639 335 aaPredicted RBP9.4□□□□□ -0.9
CD44-203ENST00000278386 UCP3P55916 312 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 CMC4P56277 68 aaPredicted RBP9.4□□□□□ -0.9
CD44-203ENST00000278386 HSPE1P61604 102 aaKnown RBP9.4□□□□□ -0.9
CD44-203ENST00000278386 VBP1P61758 197 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 IZUMO4Q1ZYL8 232 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 GATAD1Q8WUU5 269 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 ST8SIA2Q92186 375 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 ZNF414Q96IQ9 312 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 RARRES2Q99969 163 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 PDCD10Q9BUL8 212 aa9.4□□□□□ -0.9
CD44-203ENST00000278386 IGHV3-66A0A0C4DH42 116 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 DNASE2O00115 360 aaPredicted RBP9.39□□□□□ -0.91
CD44-203ENST00000278386 CA1P00915 261 aaPredicted RBP9.39□□□□□ -0.91
CD44-203ENST00000278386 IFNA17P01571 189 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 SMIM18P0DKX4 95 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 ELK1P19419 428 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 PI3P19957 117 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 SNCAP37840 140 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 NPBWR1P48145 328 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 PPP5CP53041 499 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 RPL11P62913 178 aaKnown RBP9.39□□□□□ -0.91
CD44-203ENST00000278386 DUSP18Q8NEJ0 188 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 RNASE11Q8TAA1 199 aaKnown RBP9.39□□□□□ -0.91
CD44-203ENST00000278386 FBXL17Q9UF56 701 aa9.39□□□□□ -0.91
CD44-203ENST00000278386 PUS1Q9Y606 427 aaKnown RBP eCLIP9.39□□□□□ -0.91
CD44-203ENST00000278386 CD5P06127 495 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 PIGPP57054 158 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 RND3P61587 244 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 TRIM16LQ309B1 348 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 RNASE10Q5GAN6 216 aaKnown RBP9.38□□□□□ -0.91
CD44-203ENST00000278386 LEMD1Q68G75 181 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 TOMM20LQ6UXN7 152 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 ZNF600Q6ZNG1 722 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 OR11H2Q8NH07 326 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 ZNF486Q96H40 463 aaPredicted RBP9.38□□□□□ -0.91
CD44-203ENST00000278386 FUNDC2Q9BWH2 189 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 C11orf68Q9H3H3 251 aaKnown RBP9.38□□□□□ -0.91
CD44-203ENST00000278386 TMEM231Q9H6L2 316 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 ENY2Q9NPA8 101 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 RABAC1Q9UI14 185 aa9.38□□□□□ -0.91
CD44-203ENST00000278386 AGRNO00468 2067 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 CORTO00230 105 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 SCGB2A1O75556 95 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 DFFBO76075 338 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 ATG12O94817 140 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 IGKV1-5P01602 117 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 APOHP02749 345 aaPredicted RBP9.37□□□□□ -0.91
CD44-203ENST00000278386 OPRK1P41145 380 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 DEFB131AP59861 70 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 NANOS2P60321 138 aaKnown RBP9.37□□□□□ -0.91
CD44-203ENST00000278386 RBMS2Q15434 407 aaKnown RBP9.37□□□□□ -0.91
CD44-203ENST00000278386 FAM90A2PQ658T7 463 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 MZT2AQ6P582 158 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 RPP25LQ8N5L8 163 aaKnown RBP9.37□□□□□ -0.91
CD44-203ENST00000278386 C11orf45Q8TAV5 145 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 TP53RKQ96S44 253 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 MFFQ9GZY8 342 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 MS4A6AQ9H2W1 248 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 ZFAND3Q9H8U3 227 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 COPZ2Q9P299 210 aa9.37□□□□□ -0.91
CD44-203ENST00000278386 C3orf85A0A1B0GTC6 90 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 DEFB4AO15263 64 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 DEDDO75618 318 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 CD3DP04234 171 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 RORCP51449 518 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 SUB1P53999 127 aaKnown RBP eCLIP9.36□□□□□ -0.91
CD44-203ENST00000278386 TMEM187Q14656 261 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 SCGB2B2Q4G0G5 96 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 STHQ8IWL8 128 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 CCDC71LQ8N9Z2 235 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 STXBP6Q8NFX7 210 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 AP3S1Q92572 193 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 RRNAD1Q96FB5 475 aaKnown RBP9.36□□□□□ -0.91
CD44-203ENST00000278386 VSIRQ9H7M9 311 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 KLK11Q9UBX7 282 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 DNAH6Q9C0G6 4158 aa9.36□□□□□ -0.91
CD44-203ENST00000278386 A0A0B4J293 547 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms