RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DLK1P80370 383 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 BRD3OSQ6XYD6 125 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 SVEP1Q4LDE5 3571 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 NAV2Q8IVL1 2488 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 IGLC7A0M8Q6 106 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 SMCO3A2RU48 225 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 UMAD1C9J7I0 102 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 GATA3P23771 443 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 BRS3P32247 399 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 C5orf64Q2M2E5 130 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 Q96MF0 132 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 TEX22C9J3V5 150 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 TRIM77I1YAP6 450 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 AVPP01185 164 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 REG1AP05451 166 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 FAM106CPP0CH98 169 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 AANATQ16613 207 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 ARSJQ5FYB0 599 aaPredicted RBP13.44□□□□□ -0.26
CLN3-252ENST00000636907 PRSS57Q6UWY2 283 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 BTNL8Q6UX41 500 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 FAM213BQ8TBF2 198 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 SRSF12Q8WXF0 261 aaKnown RBP13.44□□□□□ -0.26
CLN3-252ENST00000636907 HRH4Q9H3N8 390 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 WDR83OSQ9Y284 106 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 TIMM9Q9Y5J7 89 aa13.44□□□□□ -0.26
CLN3-252ENST00000636907 MAP1AP78559 2803 aaPredicted RBP13.43□□□□□ -0.26
CLN3-252ENST00000636907 PLXNB1O43157 2135 aa13.43□□□□□ -0.26
CLN3-252ENST00000636907 NCBP2LA6PVI3 153 aaKnown RBP13.43□□□□□ -0.26
CLN3-252ENST00000636907 APELAP0DMC3 54 aa13.43□□□□□ -0.26
CLN3-252ENST00000636907 ZNF616Q08AN1 781 aa13.43□□□□□ -0.26
CLN3-252ENST00000636907 AKR1C8PQ5T2L2 129 aa13.43□□□□□ -0.26
CLN3-252ENST00000636907 TREML4Q6UXN2 200 aa13.43□□□□□ -0.26
CLN3-252ENST00000636907 CENPVQ7Z7K6 275 aaPredicted RBP13.43□□□□□ -0.26
CLN3-252ENST00000636907 P2RX4Q99571 388 aa13.43□□□□□ -0.26
CLN3-252ENST00000636907 NPCDR1Q9BY65 106 aa13.43□□□□□ -0.26
CLN3-252ENST00000636907 A0A0U1RQK1 487 aa13.42□□□□□ -0.26
CLN3-252ENST00000636907 AREGP15514 252 aa13.42□□□□□ -0.26
CLN3-252ENST00000636907 KLF17Q5JT82 389 aaPredicted RBP13.42□□□□□ -0.26
CLN3-252ENST00000636907 VSIRQ9H7M9 311 aa13.42□□□□□ -0.26
CLN3-252ENST00000636907 ANKRD34BA5PLL1 514 aa13.41□□□□□ -0.26
CLN3-252ENST00000636907 CNIH1O95406 144 aa13.41□□□□□ -0.26
CLN3-252ENST00000636907 TGFAP01135 160 aa13.41□□□□□ -0.26
CLN3-252ENST00000636907 IGHV4-31P0DP07 118 aa13.41□□□□□ -0.26
CLN3-252ENST00000636907 SUB1P53999 127 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLN3-252ENST00000636907 SERF2P84101 59 aa13.41□□□□□ -0.26
CLN3-252ENST00000636907 HSD17B13Q7Z5P4 300 aaPredicted RBP13.41□□□□□ -0.26
CLN3-252ENST00000636907 MRPL41Q8IXM3 137 aaKnown RBP13.41□□□□□ -0.26
CLN3-252ENST00000636907 MARC2Q969Z3 335 aa13.41□□□□□ -0.26
CLN3-252ENST00000636907 NPVFQ9HCQ7 196 aa13.41□□□□□ -0.26
CLN3-252ENST00000636907 SOX21Q9Y651 276 aaPredicted RBP13.41□□□□□ -0.26
CLN3-252ENST00000636907 CR1P17927 2039 aa13.41□□□□□ -0.26
CLN3-252ENST00000636907 ELLP55199 621 aaPredicted RBP13.4□□□□□ -0.26
CLN3-252ENST00000636907 TMEM249Q2WGJ8 235 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 ZNF114Q8NC26 417 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 LYPD6BQ8NI32 183 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 SSMEM1Q8WWF3 244 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLN3-252ENST00000636907 FNDC10F2Z333 226 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 J3QLI3 93 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 CD69Q07108 199 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 FXYD3Q14802 87 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 MLANAQ16655 118 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 ACSM6Q6P461 480 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 C19orf35Q6ZS72 473 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 EIF4E3Q8N5X7 224 aaKnown RBP13.4□□□□□ -0.26
CLN3-252ENST00000636907 ZNF709Q8N972 641 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 Q8N9W7 124 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 MGST2Q99735 147 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 MEGF9Q9H1U4 602 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 RPRMQ9NS64 109 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 C1RLQ9NZP8 487 aa13.4□□□□□ -0.26
CLN3-252ENST00000636907 LSM4Q9Y4Z0 139 aaKnown RBP13.4□□□□□ -0.26
CLN3-252ENST00000636907 NAV3Q8IVL0 2385 aa13.4□□□□□ -0.27
CLN3-252ENST00000636907 GCN1Q92616 2671 aaKnown RBP13.4□□□□□ -0.27
CLN3-252ENST00000636907 C17orf112F2Z3M2 114 aa13.39□□□□□ -0.27
CLN3-252ENST00000636907 I3L521 148 aa13.39□□□□□ -0.27
CLN3-252ENST00000636907 MPDU1O75352 247 aa13.39□□□□□ -0.27
CLN3-252ENST00000636907 MFAP2P55001 183 aa13.39□□□□□ -0.27
CLN3-252ENST00000636907 AKR1C1Q04828 323 aa13.39□□□□□ -0.27
CLN3-252ENST00000636907 PVRIGQ6DKI7 326 aa13.39□□□□□ -0.27
CLN3-252ENST00000636907 DPPA3Q6W0C5 159 aa13.39□□□□□ -0.27
CLN3-252ENST00000636907 IL34Q6ZMJ4 242 aa13.39□□□□□ -0.27
CLN3-252ENST00000636907 RNASEH2CQ8TDP1 164 aaKnown RBP13.39□□□□□ -0.27
CLN3-252ENST00000636907 RAB19A4D1S5 217 aa13.38□□□□□ -0.27
CLN3-252ENST00000636907 TMEM41BQ5BJD5 291 aa13.38□□□□□ -0.27
CLN3-252ENST00000636907 FFAR4Q5NUL3 377 aa13.38□□□□□ -0.27
CLN3-252ENST00000636907 TEPPQ6URK8 271 aa13.38□□□□□ -0.27
CLN3-252ENST00000636907 SLC16A13Q7RTY0 426 aa13.38□□□□□ -0.27
CLN3-252ENST00000636907 PIFOQ8TCI5 191 aa13.38□□□□□ -0.27
CLN3-252ENST00000636907 ABHD5Q8WTS1 349 aa13.38□□□□□ -0.27
CLN3-252ENST00000636907 SRSF8Q9BRL6 282 aaKnown RBP13.38□□□□□ -0.27
CLN3-252ENST00000636907 FAM103A1Q9BTL3 118 aaKnown RBP13.38□□□□□ -0.27
CLN3-252ENST00000636907 FNDC4Q9H6D8 234 aaPredicted RBP13.38□□□□□ -0.27
CLN3-252ENST00000636907 NUDT19A8MXV4 375 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 AGPAT2O15120 278 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 TSPAN15O95858 294 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 GPX4P36969 197 aaPredicted RBP13.37□□□□□ -0.27
CLN3-252ENST00000636907 RAB2AP61019 212 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 CX3CL1P78423 397 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 NDPQ00604 133 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms