RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 HMCN2Q8NDA2 5059 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 CNTRLQ7Z7A1 2325 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 TINCRA0A1B0GVN0 87 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 KCNK1O00180 336 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 PRM2P04554 102 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 CTSDP07339 412 aaPredicted RBP-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 TPM1P09493 284 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 UGT2B7P16662 529 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 CAV1Q03135 178 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 SDHAF4Q5VUM1 108 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 GLT8D1Q68CQ7 371 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 Q6ZQT0 140 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 OR4E2Q8NGC2 313 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 OR2T4Q8NH00 348 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 MCFD2Q8NI22 146 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 TSKUQ8WUA8 353 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 RASSF5Q8WWW0 418 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 OPTNQ96CV9 577 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 GINS4Q9BRT9 223 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 TMEM147Q9BVK8 224 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 HDHD2Q9H0R4 259 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 FAM96AQ9H5X1 160 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 RASL12Q9NYN1 266 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 DKKL1Q9UK85 242 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 POLR1DQ9Y2S0 133 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 RYR3Q15413 4870 aa-0.07□□□□□ -2.42
SCN1A-208ENST00000625916 E9PCH4 1651 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 ABCA13Q86UQ4 5058 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 TRAV1-1A0A0B4J248 108 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 HPGDSO60760 199 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 UBL3O95164 117 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 IL3P08700 152 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 FAM228BP0C875 321 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 CCL1P22362 96 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 CASQ1P31415 396 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 CNBPP62633 177 aaKnown RBP-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 RHOGP84095 191 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 PMS2P3Q13401 168 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 PPP1R1AQ13522 171 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 KISS1Q15726 138 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 BATFQ16520 125 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 MPV17LQ2QL34 196 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 TNFAIP8L2Q6P589 184 aaPredicted RBP-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 DPPA3Q6W0C5 159 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 LCA10Q71F78 164 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 GKN2Q86XP6 184 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 OR11H6Q8NGC7 330 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 SFT2D1Q8WV19 159 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 SMIM19Q96E16 107 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 SCGB3A1Q96QR1 104 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 DCUN1D5Q9BTE7 237 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 ULBP3Q9BZM4 244 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 OR51I2Q9H344 312 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 EFCAB1Q9HAE3 211 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 CDC42SE1Q9NRR8 79 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 TAS2R4Q9NYW5 299 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 APCP25054 2843 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 RP1P56715 2156 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 MTUS2Q5JR59 1369 aa-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 TNRC6AQ8NDV7 1962 aaKnown RBP-0.08□□□□□ -2.42
SCN1A-208ENST00000625916 COL1A1P02452 1464 aaPredicted RBP-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 UNC79Q9P2D8 2635 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 FRAS1Q86XX4 4008 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 RIC1Q4ADV7 1423 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 TMEM213A2RRL7 107 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 BIRC5O15392 142 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 DNAL4O96015 105 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 REG1AP05451 166 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 BAALC-AS2P0C853 105 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 CRYGAP11844 174 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 MIFP14174 115 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 SSR2P43308 183 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 SPINK7P58062 85 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 IFITM2Q01629 132 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 AADACL3Q5VUY0 350 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 AADACL4Q5VUY2 407 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 TEX261Q6UWH6 196 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 SOSTDC1Q6X4U4 206 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 BPIFA4PQ86YQ2 179 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 IQCF2Q8IXL9 164 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 TMEM161BQ8NDZ6 487 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 C19orf60Q96EN9 201 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 DIRAS2Q96HU8 199 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 OR52A5Q9H2C5 316 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 U3KQ87 197 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 USH2AO75445 5202 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 CACNA1EQ15878 2313 aa-0.09□□□□□ -2.42
SCN1A-208ENST00000625916 NAV3Q8IVL0 2385 aa-0.1□□□□□ -2.42
SCN1A-208ENST00000625916 TRBV20OR9-2A0A075B6H5 130 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 A0A0D9SG52 128 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 CCDC160A6NGH7 325 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 OR2T8A6NH00 312 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 YKT6O15498 198 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 HLA-DRAP01903 254 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 MAP2K4P45985 399 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 MAP3K7CLP57077 242 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 CCL20P78556 96 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 PSG9Q00887 426 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 RSU1Q15404 277 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 KHDC3LQ587J8 217 aa-0.1□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms