RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 POM121L2Q96KW2 1035 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 LSM4Q9Y4Z0 139 aaKnown RBP8.95□□□□□ -0.98
UPF3A-212ENST00000619079 CHD8Q9HCK8 2581 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 IGF2RP11717 2491 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 OR2J3O76001 311 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 CA6P23280 308 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 CRYBB3P26998 211 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 OTX2P32243 289 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 SLAQ13239 276 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 FXYD3Q14802 87 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 TEPPQ6URK8 271 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 RPS19BP1Q86WX3 136 aaKnown RBP8.95□□□□□ -0.98
UPF3A-212ENST00000619079 SPACA3Q8IXA5 215 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 OR2Y1Q8NGV0 311 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 MEGF9Q9H1U4 602 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 WDR54Q9H977 334 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 HEYLQ9NQ87 328 aaPredicted RBP8.95□□□□□ -0.98
UPF3A-212ENST00000619079 TNFRSF19Q9NS68 423 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 SERTAD4Q9NUC0 356 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 POLDIP2Q9Y2S7 368 aa8.95□□□□□ -0.98
UPF3A-212ENST00000619079 PRSS46E5RG02 174 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 APOBEC3AP31941 199 aaPredicted RBP8.94□□□□□ -0.98
UPF3A-212ENST00000619079 PSG9Q00887 426 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 STPG3Q8N7X2 389 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 UBALD1Q8TB05 177 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 OR2V2Q96R30 315 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 TMEM191AQ9H0A3 160 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 LOC400499M0QZD8 3231 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 MUC21A0A0G2JKD1 596 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 MUC21A0A140T8X8 626 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 TMEM30CPA0ZSE6 113 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 CXCL13O43927 109 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 KLF7O75840 302 aaPredicted RBP8.94□□□□□ -0.98
UPF3A-212ENST00000619079 CA7P43166 264 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 PPOXP50336 477 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 BRWD1-AS2P59051 145 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 HIST1H1AQ02539 215 aaPredicted RBP8.94□□□□□ -0.98
UPF3A-212ENST00000619079 MUC21Q5SSG8 566 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 GTF2H5Q6ZYL4 71 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 SLC25A40Q8TBP6 338 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 SSMEM1Q8WWF3 244 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 NEUROG1Q92886 237 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 CHRDL1Q9BU40 450 aa8.94□□□□□ -0.98
UPF3A-212ENST00000619079 URB1O60287 2271 aaKnown RBP8.94□□□□□ -0.98
UPF3A-212ENST00000619079 ZNF407Q9C0G0 2248 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 CGAP01215 116 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 S100A7P31151 101 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 SSTR5P35346 364 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 SSR4P51571 173 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 SMIM21Q3B7S5 101 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 GGNQ86UU5 652 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 OR4A16Q8NH70 328 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 C5orf30Q96GV9 206 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 TRIB1Q96RU8 372 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 RTL8AQ9BWD3 113 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 MS4A6AQ9H2W1 248 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 PROK2Q9HC23 129 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 TECRQ9NZ01 308 aaKnown RBP8.93□□□□□ -0.98
UPF3A-212ENST00000619079 TMEM8BA6NDV4 472 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 OOEPA6NGQ2 149 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 RHBDL1O75783 438 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 NGFP01138 241 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 IGLC1P0CG04 106 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 MGST1P10620 155 aaKnown RBP8.93□□□□□ -0.98
UPF3A-212ENST00000619079 B3GALT5-AS1P59052 145 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 PLGLB1Q02325 96 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 ZNF146Q15072 292 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 ERASQ7Z444 233 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 LINC00470Q9BZP3 86 aa8.93□□□□□ -0.98
UPF3A-212ENST00000619079 ZNF430Q9H8G1 570 aaPredicted RBP8.93□□□□□ -0.98
UPF3A-212ENST00000619079 VDAC2P45880 294 aaPredicted RBP8.92□□□□□ -0.98
UPF3A-212ENST00000619079 MFAP2P55001 183 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 PSG5Q15238 335 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 ATP1A1-AS1Q5TC04 95 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 PRAMEF5Q5TYX0 476 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 PRAMEF6Q5VXH4 476 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 SPATA31B1PQ5VZV4 182 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 FAM231DQ6ZW35 169 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 ATP5L2Q7Z4Y8 100 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 OR10D3Q8NH80 312 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 CHCHD1Q96BP2 118 aaKnown RBP8.92□□□□□ -0.98
UPF3A-212ENST00000619079 PMCHL2Q9BQD1 86 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 PLEKHA3Q9HB20 300 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 TPRP12270 2363 aaKnown RBP8.92□□□□□ -0.98
UPF3A-212ENST00000619079 CNTRLQ7Z7A1 2325 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 C12orf77C9JDV5 145 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 FNDC10F2Z333 226 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 SYS1-DBNDD2H3BUS1 97 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 NKX2-8O15522 239 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 MRPL33O75394 65 aaKnown RBP8.92□□□□□ -0.98
UPF3A-212ENST00000619079 TAS2R45P59539 299 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 SEC11AP67812 179 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 PAX2Q02962 417 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 PLP2Q04941 152 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 PCOLCEQ15113 449 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 RNFT1Q5M7Z0 435 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 TNFRSF14Q92956 283 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 IGF2BP2-AS1Q96M15 143 aa8.92□□□□□ -0.98
UPF3A-212ENST00000619079 TRGV8A0A0C4DH27 118 aa8.91□□□□□ -0.98
UPF3A-212ENST00000619079 A0A1W2PRE2 83 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms