RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 HTN1P15515 57 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 TFPI2P48307 235 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 C10orf55Q5SWW7 151 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 PRSS3P2Q8NHM4 247 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 PITPNC1Q9UKF7 332 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 MBD3L4A6NDZ8 208 aaPredicted RBP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 MBD3L3A6NE82 208 aaPredicted RBP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 MBD3L5A6NJ08 208 aaPredicted RBP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 SRRM5B3KS81 715 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 IGKV3-15P01624 115 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 SMIM6P0DI80 62 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 LYL1P12980 280 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 TWIST1Q15672 202 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 LINC00518Q8N0U6 118 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 MBD3L2Q8NHZ7 208 aaPredicted RBP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 SLC25A33Q9BSK2 321 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 MPDZO75970 2070 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 TNFSF13O75888 250 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 WISP2O76076 250 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 DNM1P46Q6ZS02 220 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 EIF4E3Q8N5X7 224 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 C5orf17Q8NAS9 161 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 DCAF16Q9NXF7 216 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 CBLN1P23435 193 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 CCDC144NLQ6NUI1 221 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 COLCA1Q6ZS62 124 aa7.38□□□□□ -1.23
PDLIM5-222ENST00000615540 BRWD1Q9NSI6 2320 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 AMY1AP04745 511 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 RPL29P47914 159 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 SSX8Q7RTT4 187 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 OR51G1Q8NGK1 321 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 GPR61Q9BZJ8 451 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 C1QTNF9P0C862 333 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 PRSS33Q8NF86 280 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 OR4A5Q8NH83 315 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 CD5P06127 495 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 PYYP10082 97 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 HNRNPA3P51991 378 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 MFAP2P55001 183 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 MST1LQ2TV78 715 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 CHODLQ9H9P2 273 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 SDF2L1Q9HCN8 221 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 MUC21A0A0G2JKD1 596 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 MUC21A0A140T8X8 626 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 LOXL3P58215 753 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 MUC21Q5SSG8 566 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 HSPB7Q9UBY9 170 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 PAM16Q9Y3D7 125 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 AUP1Q9Y679 476 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 A0A087X0M5 115 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 A0A1B0GX30 115 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 IL4P05112 153 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 RNF224P0DH78 156 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 HIST1H1EP10412 219 aaKnown RBP7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 TMEM177Q53S58 311 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 CLEC2AQ6UVW9 174 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 C1QL4Q86Z23 238 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 MGST2Q99735 147 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 C1RLQ9NZP8 487 aa7.37□□□□□ -1.23
PDLIM5-222ENST00000615540 TRIOO75962 3097 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 TMEM183BQ1AE95 376 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 NEU1Q99519 415 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 C9JQL5 133 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 CXCL1P09341 107 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 COL8A2P25067 703 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 RPL23P62829 140 aaKnown RBP7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 ZNF585BQ52M93 769 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 GOLT1AQ6ZVE7 132 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 RNASE7Q9H1E1 156 aaKnown RBP7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 GSX1Q9H4S2 264 aaPredicted RBP7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 MGPP08493 103 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 SFTPCP11686 197 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 ATP5J2P56134 94 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 OSR1Q8TAX0 266 aaPredicted RBP7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 RNF138Q8WVD3 245 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 RABAC1Q9UI14 185 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 TMEM178BH3BS89 294 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 RNASE6Q93091 150 aaKnown RBP7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 HSPB9Q9BQS6 159 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 DERL1Q9BUN8 251 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 WNT10AQ9GZT5 417 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 FOXI3A8MTJ6 420 aaPredicted RBP7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 F5H697 171 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 CCKARP32238 428 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 MEF2CQ06413 473 aaPredicted RBP7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 ELOBQ15370 118 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 TMEM133Q9H2Q1 129 aa7.36□□□□□ -1.23
PDLIM5-222ENST00000615540 OR2T8A6NH00 312 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 NPIPB11E5RHQ5 1161 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 TREML4Q6UXN2 200 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 C11orf42Q8N5U0 333 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 OR8A1Q8NGG7 326 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 TBX15Q96SF7 602 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 SDK2Q58EX2 2172 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 TRBV6-6A0A0A6YYG2 114 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 OR5AL1P0C617 328 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 OR5R1Q8NH85 324 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 TMEM189A5PLL7 270 aa7.35□□□□□ -1.23
PDLIM5-222ENST00000615540 DPRXA6NFQ7 191 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms