RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 MBD2Q9UBB5 411 aa5.1□□□□□ -1.59
VPS53-209ENST00000570771 RCL1Q9Y2P8 373 aaKnown RBP5.1□□□□□ -1.59
VPS53-209ENST00000570771 STRAPQ9Y3F4 350 aaKnown RBP5.1□□□□□ -1.59
VPS53-209ENST00000570771 WSB1Q9Y6I7 421 aa5.1□□□□□ -1.59
VPS53-209ENST00000570771 U3KQ87 197 aa5.1□□□□□ -1.59
VPS53-209ENST00000570771 TRAV3A0A0B4J244 114 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 A0A0D9SG52 128 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 TEX50A0A1B0GTY4 177 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 INS-IGF2F8WCM5 200 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 CLDN34H7C241 214 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 CORTO00230 105 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 NXPH3O95157 252 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 IFNA10P01566 189 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 LYL1P12980 280 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 CAV2P51636 162 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 HILS1P60008 231 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 UBA52P62987 128 aaKnown RBP5.09□□□□□ -1.59
VPS53-209ENST00000570771 HBG1P69891 147 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 HBG2P69892 147 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 CX3CL1P78423 397 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 BAXQ07812 192 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 OR2F1Q13607 317 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 ZNF345Q14585 488 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 FXYD3Q14802 87 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 TMEM95Q3KNT9 176 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 ACOT7LQ6ZUV0 252 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 OR2C3Q8N628 320 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.09□□□□□ -1.59
VPS53-209ENST00000570771 OR1L6Q8NGR2 347 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 SRSF12Q8WXF0 261 aaKnown RBP5.09□□□□□ -1.59
VPS53-209ENST00000570771 ARPC1AQ92747 370 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 GON7Q9BXV9 100 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 PRSS22Q9GZN4 317 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 NPFFR1Q9GZQ6 430 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 MAGT1Q9H0U3 335 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 PLSCR3Q9NRY6 295 aa5.09□□□□□ -1.59
VPS53-209ENST00000570771 LYRM2Q9NU23 88 aaPredicted RBP5.09□□□□□ -1.59
VPS53-209ENST00000570771 COL6A5A8TX70 2615 aa5.09□□□□□ -1.6
VPS53-209ENST00000570771 STAB1Q9NY15 2570 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 TRAV14DV4A0A0A6YYC5 116 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 MSGN1A6NI15 193 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 LINC01548A6NM66 108 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 TRIM77I1YAP6 450 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 TAAR5O14804 337 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 ARPC5O15511 151 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 CRYBA1P05813 215 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 OR8U8P0C7N1 319 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 OR13C7P0DN81 318 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 IAPPP10997 89 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 NPY1RP25929 384 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 RPL12P30050 165 aaKnown RBP5.08□□□□□ -1.6
VPS53-209ENST00000570771 EIF2B2P49770 351 aaKnown RBP5.08□□□□□ -1.6
VPS53-209ENST00000570771 AP2S1P53680 142 aaPredicted RBP5.08□□□□□ -1.6
VPS53-209ENST00000570771 KRTAP10-3P60369 221 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 EIF5AP63241 154 aaKnown RBP5.08□□□□□ -1.6
VPS53-209ENST00000570771 NDPQ00604 133 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 PJVKQ0ZLH3 352 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 ARSJQ5FYB0 599 aaPredicted RBP5.08□□□□□ -1.6
VPS53-209ENST00000570771 C9orf152Q5JTZ5 239 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 SPANXN5Q5MJ07 72 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 SLC35E3Q7Z769 313 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 SLC24A4Q8NFF2 622 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 SGMS2Q8NHU3 365 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 GRPEL2Q8TAA5 225 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 AQP10Q96PS8 301 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 RNF126Q9BV68 326 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 MFFQ9GZY8 342 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 PARP11Q9NR21 331 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 OR5AC2Q9NZP5 309 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 ZNF580Q9UK33 172 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 PAIP2BQ9ULR5 123 aaKnown RBP5.08□□□□□ -1.6
VPS53-209ENST00000570771 TNFSF18Q9UNG2 199 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 VWFP04275 2813 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 PLXNB1O43157 2135 aa5.08□□□□□ -1.6
VPS53-209ENST00000570771 IGHV7-81A0A0B4J1V7 117 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 RPS10-NUDT3A0A1W2PQS6 291 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 KANTRA0A1W2PQU2 76 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 NPIPB5A8MRT5 1133 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 H0YIZ8 118 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 SMLR1H3BR10 107 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 AP4M1O00189 453 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 FCN1O00602 326 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 DFFBO76075 338 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 IGHG2P01859 326 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 OPN1MWP04001 364 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 IFNA4P05014 189 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 OPN1MW2P0DN77 364 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 OPN1MW3P0DN78 364 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 DEFA4P12838 97 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 MYOD1P15172 320 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 HIST1H1BP16401 226 aaKnown RBP5.07□□□□□ -1.6
VPS53-209ENST00000570771 S100A11P31949 105 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 VDAC2P45880 294 aaPredicted RBP5.07□□□□□ -1.6
VPS53-209ENST00000570771 SULT1A1P50225 295 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 CRIP2P52943 208 aaPredicted RBP5.07□□□□□ -1.6
VPS53-209ENST00000570771 BLCAPP62952 87 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 CD300CQ08708 224 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 ATP6V1FQ16864 119 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 AKIRIN2Q53H80 203 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 C2orf83Q53S99 150 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms