RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 LYRM2Q9NU23 88 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-211ENST00000552338 F11RQ9Y624 299 aaKnown RBP7.52□□□□□ -1.21
LIMA1-211ENST00000552338 MAST4O15021 2626 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 TRAV41A0A0B4J266 112 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 A0A1B0GUS0 222 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 C15orf62A8K5M9 175 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 CEBPZOSA8MTT3 80 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 PRSS46E5RG02 174 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 FNDC10F2Z333 226 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 CORTO00230 105 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 WRBO00258 174 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 FBXO24O75426 580 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 IGHG4P01861 327 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 HKR1P10072 659 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 RPL23AP62750 156 aaKnown RBP7.51□□□□□ -1.21
LIMA1-211ENST00000552338 COMMD1Q8N668 190 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 LFNGQ8NES3 379 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 THAP6Q8TBB0 222 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 TMEM170AQ8WVE7 144 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 WFDC12Q8WWY7 111 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 FANCD2OSQ96PS1 177 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 AQP10Q96PS8 301 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 ATP6V0BQ99437 205 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 P2RX4Q99571 388 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 ENY2Q9NPA8 101 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 OR5AC2Q9NZP5 309 aa7.51□□□□□ -1.21
LIMA1-211ENST00000552338 IGLV11-55A0A075B6I3 123 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 CRYBA1P05813 215 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 OR13C7P0DN81 318 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 AREGP15514 252 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 HIST1H1BP16401 226 aaKnown RBP7.5□□□□□ -1.21
LIMA1-211ENST00000552338 FCGR2BP31994 310 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-211ENST00000552338 HOXA1P49639 335 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-211ENST00000552338 SUB1P53999 127 aaKnown RBP eCLIP7.5□□□□□ -1.21
LIMA1-211ENST00000552338 ZNF345Q14585 488 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 UNQ5815/PRO19632Q6UWF5 114 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 TMEM252Q8N6L7 170 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 SLC24A4Q8NFF2 622 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 OR11H4Q8NGC9 324 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 MYOZ3Q8TDC0 251 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 RNASEH2CQ8TDP1 164 aaKnown RBP7.5□□□□□ -1.21
LIMA1-211ENST00000552338 HYLS1Q96M11 299 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 DUX5Q96PT3 197 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 FAM103A1Q9BTL3 118 aaKnown RBP7.5□□□□□ -1.21
LIMA1-211ENST00000552338 MAGT1Q9H0U3 335 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 HEYLQ9NQ87 328 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-211ENST00000552338 PSENENQ9NZ42 101 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 MBD2Q9UBB5 411 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 TNFSF18Q9UNG2 199 aa7.5□□□□□ -1.21
LIMA1-211ENST00000552338 LSM5Q9Y4Y9 91 aaKnown RBP7.5□□□□□ -1.21
LIMA1-211ENST00000552338 SH2D7A6NKC9 451 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-211ENST00000552338 G3V318 75 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 SSSCA1O60232 199 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 SOX15O60248 233 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 SCGB1D2O95969 90 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 OPN1MWP04001 364 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 ELANEP08246 267 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 OPN1MW2P0DN77 364 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 OPN1MW3P0DN78 364 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 NPY1RP25929 384 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 PSMB8P28062 276 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 GPX4P36969 197 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-211ENST00000552338 SNCAP37840 140 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 MFAP2P55001 183 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 GNB1P62873 340 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 BAXQ07812 192 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 OR2T6Q8NHC8 308 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 LINC01006Q8NI28 216 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 GRPEL2Q8TAA5 225 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 CACNG8Q8WXS5 425 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 GGACTQ9BVM4 153 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 SLC25A31Q9H0C2 315 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 SLA2Q9H6Q3 261 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 PARP11Q9NR21 331 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 TNFRSF19Q9NS68 423 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 STRAPQ9Y3F4 350 aaKnown RBP7.49□□□□□ -1.21
LIMA1-211ENST00000552338 DMRT1Q9Y5R6 373 aa7.49□□□□□ -1.21
LIMA1-211ENST00000552338 C2CD3Q4AC94 2353 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 RNF222A6NCQ9 220 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 L7N2F9 121 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 CYB5BO43169 146 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 IAPPP10997 89 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 MDKP21741 143 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-211ENST00000552338 SULT1A1P50225 295 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 PROK1P58294 105 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 S100A10P60903 97 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 RAB11AP62491 216 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 VAMP2P63027 116 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 CD300CQ08708 224 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 FOXE3Q13461 319 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 OR2F1Q13607 317 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 EXOSC2Q13868 293 aaKnown RBP7.48□□□□□ -1.21
LIMA1-211ENST00000552338 KIAA0141Q14154 515 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-211ENST00000552338 ATP6V1FQ16864 119 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 VWC2Q2TAL6 325 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 LRRC37A5PQ49AS3 106 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 SPANXN5Q5MJ07 72 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 ACOT7LQ6ZUV0 252 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 ZNF546Q86UE3 836 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 OR4F5Q8NH21 305 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms