RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 GATA3P23771 443 aa10.27□□□□□ -0.76
USP3-203ENST00000538686 TMPRSS3P57727 454 aa10.27□□□□□ -0.76
USP3-203ENST00000538686 NANOS1Q8WY41 292 aaKnown RBP10.27□□□□□ -0.76
USP3-203ENST00000538686 NDFIP1Q9BT67 221 aa10.27□□□□□ -0.76
USP3-203ENST00000538686 UFC1Q9Y3C8 167 aa10.27□□□□□ -0.76
USP3-203ENST00000538686 FBLL1A6NHQ2 334 aaKnown RBP10.27□□□□□ -0.77
USP3-203ENST00000538686 TMEM150CB9EJG8 249 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 SNAI2O43623 268 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 CER1O95813 267 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 ARL4DP49703 201 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 ATP5G2Q06055 141 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 ETDBQ3ZM63 59 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 GAGE13Q4V321 117 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 C8orf46Q8TAG6 207 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 YAE1D1Q9NRH1 226 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 DEPPQ9NTK1 212 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 HRASLS2Q9NWW9 162 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 HIGD1BQ9P298 99 aa10.27□□□□□ -0.77
USP3-203ENST00000538686 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.26□□□□□ -0.77
USP3-203ENST00000538686 C15orf62A8K5M9 175 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 E9PLD3 99 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 WISP2O76076 250 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 BRI3O95415 125 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 CELA2BP08218 269 aaPredicted RBP10.26□□□□□ -0.77
USP3-203ENST00000538686 GABRG2P18507 467 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 CSN1S1P47710 185 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 EFNB3Q15768 340 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 TREML4Q6UXN2 200 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 ZADH2Q8N4Q0 377 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 WDR31Q8NA23 367 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 B5MCH6 92 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 CT45A10P0DMU9 189 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 Q6ZUT4 128 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 SMIM20Q8N5G0 67 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 OR1L3Q8NH93 324 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 MGST2Q99735 147 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 C1QTNF5Q9BXJ0 243 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 CDIP1Q9H305 208 aa10.26□□□□□ -0.77
USP3-203ENST00000538686 COL5A1P20908 1838 aaPredicted RBP10.25□□□□□ -0.77
USP3-203ENST00000538686 NCOA6Q14686 2063 aaPredicted RBP10.25□□□□□ -0.77
USP3-203ENST00000538686 LINC00271P0C7V0 271 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 CRYGSP22914 178 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 ZXDAP98168 799 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 LGALS9BQ3B8N2 356 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 MIC13Q5XKP0 118 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 LGALS9CQ6DKI2 356 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 MMABQ96EY8 250 aaPredicted RBP10.25□□□□□ -0.77
USP3-203ENST00000538686 C1QTNF4Q9BXJ3 329 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 RNF208Q9H0X6 261 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 DEC1Q9P2X7 70 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 KIAA1549Q9HCM3 1950 aa10.25□□□□□ -0.77
USP3-203ENST00000538686 H3BML4 177 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 APOMO95445 188 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 LTBRP36941 435 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 CAMPP49913 170 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 CATR1Q13166 79 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 FOXE3Q13461 319 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 SLC25A53Q5H9E4 307 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 ZFAND6Q6FIF0 208 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 ZNF747Q9BV97 191 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 WNT16Q9UBV4 365 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 LOC102723996A0A087X1L8 192 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 HIGD1CA8MV81 97 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 C3orf80F5H4A9 247 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 ERVK11-1P61568 191 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 DEFB110Q30KQ9 67 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 SH2D6Q7Z4S9 175 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 STPG3Q8N7X2 389 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 SYT8Q8NBV8 401 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 ARPC1AQ92747 370 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 ZDHHC16Q969W1 377 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 NABP1Q96AH0 204 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 VWCEQ96DN2 955 aa10.24□□□□□ -0.77
USP3-203ENST00000538686 HEYLQ9NQ87 328 aaPredicted RBP10.24□□□□□ -0.77
USP3-203ENST00000538686 hCG_38984A0A1B0GV85 526 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 IGHG4P01861 327 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 BCL3P20749 454 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 VDAC2P45880 294 aaPredicted RBP10.23□□□□□ -0.77
USP3-203ENST00000538686 FASLGP48023 281 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 FOXI1Q12951 378 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 CST6Q15828 149 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 H2BFWTQ7Z2G1 175 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 DRAM1Q8N682 238 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 SNRNP40Q96DI7 357 aaKnown RBP10.23□□□□□ -0.77
USP3-203ENST00000538686 PLEKHA3Q9HB20 300 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 ZNF355PQ9NSJ1 428 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 INSIG2Q9Y5U4 225 aa10.23□□□□□ -0.77
USP3-203ENST00000538686 FKBP2P26885 142 aaKnown RBP10.22□□□□□ -0.77
USP3-203ENST00000538686 CTGFP29279 349 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 G6PCP35575 357 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 PPP1R32Q7Z5V6 425 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 TEX29Q8N6K0 151 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 MRPL43Q8N983 215 aaKnown RBP10.22□□□□□ -0.77
USP3-203ENST00000538686 PIGCQ92535 297 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 SSBP3Q9BWW4 388 aaPredicted RBP10.22□□□□□ -0.77
USP3-203ENST00000538686 TM2D2Q9BX73 214 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 RAB1BQ9H0U4 201 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 B4GALT7Q9UBV7 327 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 LSM4Q9Y4Z0 139 aaKnown RBP10.22□□□□□ -0.77
USP3-203ENST00000538686 MED12LQ86YW9 2145 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms