RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ATP8B1O43520 1251 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 ENSAO43768 121 aaKnown RBP1.39□□□□□ -2.19
CD44-233ENST00000531141 SSNA1O43805 119 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 IFNA5P01569 189 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 IFNA6P05013 189 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 LIMS3P0CW19 117 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 LIMS4P0CW20 117 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 COX5BP10606 129 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 PVALBP20472 110 aaPredicted RBP1.39□□□□□ -2.19
CD44-233ENST00000531141 PSMB9P28065 219 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 EVI2BP34910 448 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 CA7P43166 264 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 AP2S1P53680 142 aaPredicted RBP1.39□□□□□ -2.19
CD44-233ENST00000531141 AP3S2P59780 193 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 ACTBP60709 375 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 ACTG1P63261 375 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 PSG4Q00888 419 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 TMED2Q15363 201 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 TRAM1Q15629 374 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 TRIP13Q15645 432 aaPredicted RBP1.39□□□□□ -2.19
CD44-233ENST00000531141 CLEC12BQ2HXU8 276 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 KRTAP13-4Q3LI77 160 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 C10orf91Q5T1B1 145 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 SPOPLQ6IQ16 392 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 ALKAL1Q6UXT8 129 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 ZIC4Q8N9L1 334 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 OR52E4Q8NGH9 312 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 PIGXQ8TBF5 258 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 PTH2Q96A98 100 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 SMIM19Q96E16 107 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 PITX2Q99697 317 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 SUCNR1Q9BXA5 334 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 PARD6GQ9BYG4 376 aaPredicted RBP1.39□□□□□ -2.19
CD44-233ENST00000531141 MRPS26Q9BYN8 205 aaKnown RBP1.39□□□□□ -2.19
CD44-233ENST00000531141 ARL6Q9H0F7 186 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 CENPHQ9H3R5 247 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 IFT46Q9NQC8 304 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 TMEM106BQ9NUM4 274 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 TAS2R9Q9NYW1 312 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 RPUSD1Q9UJJ7 312 aaKnown RBP1.39□□□□□ -2.19
CD44-233ENST00000531141 PRELID1Q9Y255 219 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 BTRCQ9Y297 605 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 TBL2Q9Y4P3 447 aaKnown RBP1.39□□□□□ -2.19
CD44-233ENST00000531141 CITO14578 2027 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 HMCN1Q96RW7 5635 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ABCA1O95477 2261 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ANAPC1Q9H1A4 1944 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 STAB2Q8WWQ8 2551 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 IGHV2-26A0A0B4J1V2 119 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 SPTY2D1-AS1A0A0U1RR47 76 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 TMEM114B3SHH9 223 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 E5RI56 91 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 F5H5K5 113 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 H0Y980 276 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 CCRL2O00421 344 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 TP53I11O14683 189 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ACOX3O15254 700 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 DENRO43583 198 aaKnown RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 ADAP1O75689 374 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ZNF189O75820 626 aaPredicted RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 DCTN3O75935 186 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 CA2P00918 260 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ASS1P00966 412 aaKnown RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 IGKV1-16P04430 117 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ISG15P05161 165 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 OR12D1P0DN82 309 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 KCNE1P15382 129 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ZNF7P17097 686 aaPredicted RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 COILP38432 576 aaPredicted RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 DLX6P56179 175 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 RAB25P57735 213 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 OR10A3P58181 314 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 SARNPP82979 210 aaKnown RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 BAXQ07812 192 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 TSPAN31Q12999 210 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 SNCBQ16143 134 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 TBC1D28Q2M2D7 210 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 CEACAM21Q3KPI0 293 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 TMEM176BQ3YBM2 270 aaPredicted RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 OR10J3Q5JRS4 329 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ELP2Q6IA86 826 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 DNM1P34Q6PK57 102 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 Q6ZS92 163 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 SLC13A5Q86YT5 568 aaPredicted RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 MSRB3Q8IXL7 192 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 C10orf67Q8IYJ2 551 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 C2orf73Q8N5S3 287 aaPredicted RBP1.38□□□□□ -2.19
CD44-233ENST00000531141 OR2V1Q8NHB1 315 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 OR5P2Q8WZ92 322 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 HIST1H2BAQ96A08 127 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 REEP6Q96HR9 211 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 RBP7Q96R05 134 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 DHRS9Q9BPW9 319 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 TSSK6Q9BXA6 273 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ZNF286AQ9HBT8 521 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 SLC23A2Q9UGH3 650 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 C3orf18Q9UK00 162 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 HSPE1-MOB4S4R3N1 261 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 ABCA13Q86UQ4 5058 aa1.38□□□□□ -2.19
CD44-233ENST00000531141 NCOA6Q14686 2063 aaPredicted RBP1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms