RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 OR1S1Q8NH92 325 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 RBMXL1Q96E39 390 aaKnown RBP5.85□□□□□ -1.47
CD44-228ENST00000528455 TMEM68Q96MH6 324 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 NEURL2Q9BR09 285 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 PDCD10Q9BUL8 212 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 NDUFA4L2Q9NRX3 87 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 MOB4Q9Y3A3 225 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 OR51B2Q9Y5P1 312 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 FBN3Q75N90 2809 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 A0A1W2PRX2 142 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 CCSO14618 274 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 KCNAB3O43448 404 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 SYNGR2O43760 224 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 CHST1O43916 411 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 CNIH1O95406 144 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 MPC2O95563 127 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 MBPP02686 304 aaPredicted RBP5.84□□□□□ -1.47
CD44-228ENST00000528455 TAS2R30P59541 319 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 OR2B8PP59922 312 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 HILS1P60008 231 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 ERHP84090 104 aaKnown RBP5.84□□□□□ -1.47
CD44-228ENST00000528455 TMEM267Q0VDI3 215 aaPredicted RBP5.84□□□□□ -1.47
CD44-228ENST00000528455 ICAM4Q14773 271 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 FXYD3Q14802 87 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 AKIRIN2Q53H80 203 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 LCE4AQ5TA78 99 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 TMEM219Q86XT9 240 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 TCTE3Q8IZS6 198 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 PPP1R1CQ8WVI7 109 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 ST6GAL2Q96JF0 529 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 SMIM8Q96KF7 97 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 CIB3Q96Q77 187 aaPredicted RBP5.84□□□□□ -1.47
CD44-228ENST00000528455 RAB40CQ96S21 281 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 CLCC1Q96S66 551 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 RNF126Q9BV68 326 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 QTRT1Q9BXR0 403 aaKnown RBP5.84□□□□□ -1.47
CD44-228ENST00000528455 CHIAQ9BZP6 476 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 PRSS22Q9GZN4 317 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 HIPK2Q9H2X6 1198 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 NSG2Q9Y328 171 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 U3KQ87 197 aa5.84□□□□□ -1.47
CD44-228ENST00000528455 ANK2Q01484 3957 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 IGHV7-81A0A0B4J1V7 117 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 A0A1W2PN81 502 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 MSGN1A6NI15 193 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 E7EUB6 86 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 TRIM77I1YAP6 450 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 PFDN1O60925 122 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 CA2P00918 260 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 IGF1P05019 195 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 PET100P0DJ07 73 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 SLC25A4P12235 298 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 LYL1P12980 280 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 PVALBP20472 110 aaPredicted RBP5.83□□□□□ -1.48
CD44-228ENST00000528455 CHRNA7P36544 502 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 RPL27AP46776 148 aaKnown RBP5.83□□□□□ -1.48
CD44-228ENST00000528455 BLCAPP62952 87 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 RPP30P78346 268 aaKnown RBP5.83□□□□□ -1.48
CD44-228ENST00000528455 PRCDQ00LT1 54 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 FOXL1Q12952 345 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 RAB32Q13637 225 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 TNXAQ16473 311 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 TMEM65Q6PI78 240 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 AKAP14Q86UN6 197 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 NOXA1Q86UR1 476 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 SGMS2Q8NHU3 365 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 THAP6Q8TBB0 222 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 PPP1R14BQ96C90 147 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 WWC2-AS2Q96NR7 200 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 NPFFR1Q9GZQ6 430 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 RANGRFQ9HD47 186 aaPredicted RBP5.83□□□□□ -1.48
CD44-228ENST00000528455 ZNF580Q9UK33 172 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 WSB1Q9Y6I7 421 aa5.83□□□□□ -1.48
CD44-228ENST00000528455 DNAJC9-AS1A6NH13 148 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 CGB1A6NKQ9 187 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 HMSDA8MTL9 139 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 CEBPZOSA8MTT3 80 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 E5RGE8 158 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 K7EPK0 472 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 WRBO00258 174 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 GPR137BO60478 399 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 DEDDO75618 318 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 TSPAN9O75954 239 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 BRI3O95415 125 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 CRYBA1P05813 215 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 CRYGCP07315 174 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 EGR2P11161 476 aaPredicted RBP5.82□□□□□ -1.48
CD44-228ENST00000528455 VDAC2P45880 294 aaPredicted RBP5.82□□□□□ -1.48
CD44-228ENST00000528455 CRIP2P52943 208 aaPredicted RBP5.82□□□□□ -1.48
CD44-228ENST00000528455 SUB1P53999 127 aaKnown RBP eCLIP5.82□□□□□ -1.48
CD44-228ENST00000528455 PAX9P55771 341 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 POLR2GP62487 172 aaKnown RBP eCLIP5.82□□□□□ -1.48
CD44-228ENST00000528455 RPL23AP62750 156 aaKnown RBP5.82□□□□□ -1.48
CD44-228ENST00000528455 SSBP2P81877 361 aaPredicted RBP5.82□□□□□ -1.48
CD44-228ENST00000528455 KLK9Q2XQG4 91 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 C11orf87Q6NUJ2 197 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 PRSS54Q6PEW0 395 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 Q8N2B8 174 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 TTC9CQ8N5M4 171 aa5.82□□□□□ -1.48
CD44-228ENST00000528455 OR1L6Q8NGR2 347 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms